View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16486_low_9 (Length: 462)
Name: NF16486_low_9
Description: NF16486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16486_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 3 - 445
Target Start/End: Original strand, 6917060 - 6917512
Alignment:
| Q |
3 |
aaggtttagaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcattc |
102 |
Q |
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| T |
6917060 |
aaggtctagaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcattc |
6917159 |
T |
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| Q |
103 |
acggcggcgacagtgaagtctccgttgaaccgccttcattagtcaaagctcg-------ccattgacagcaccccgagtttcccatggacacgctcagag |
195 |
Q |
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| T |
6917160 |
acggcggcgacagtgaagtctccgccaaaccgccttcattagtcaaagctcgagcagcgccattgacagcacgccgagtttcccacagacacgctcagag |
6917259 |
T |
|
| Q |
196 |
attgatcctgaagccgcagcagtttgagacgagtccgctcccgtatctggcaatcagtttgagctgtgctgtgctcgtggaagcctagccgcccaggaga |
295 |
Q |
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| T |
6917260 |
attgatcctgaagccgcagcagtttgagacgagtctgctcccgtatctggcaaacagtttgagctgtgccatgctcgtggaagcgtagccacccaggaga |
6917359 |
T |
|
| Q |
296 |
--ccgcccaagaatt-atctgaagccgtgttcgttcccggcaacagttgagcccaacgagaacacacaccagttctgcaacaggaaacaggtactatccg |
392 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6917360 |
ggccgcccaagaattgatctgaagccgtgttcgttcccggcaacagttgagcccaacgagaacacacaccagttctgcaacagggaacaggtactatccg |
6917459 |
T |
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| Q |
393 |
gagacgagtttgaagccgggagcacttcgctccccatacagaggtcacaactg |
445 |
Q |
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| T |
6917460 |
gagacgagtttgaagccgggagcacttcgctccccatacagaggtcacaactg |
6917512 |
T |
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