View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16487_high_1 (Length: 562)
Name: NF16487_high_1
Description: NF16487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16487_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 21 - 551
Target Start/End: Original strand, 32598243 - 32598773
Alignment:
| Q |
21 |
tatgagacatcattgtaaccttgaaaggtaacttacatacttccatacctcattgatgatagtaggaagaaataaacagtaggggttggtcataggttcc |
120 |
Q |
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| T |
32598243 |
tatgagacatcattgta-ccttgaaaggtaacttacatacttccatacctcattgatgatagtaggaagaaataaacagtagggggtggtcataggttcc |
32598341 |
T |
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| Q |
121 |
ttatgnnnnnnnntttgacaatgatttggcgatgaaacttattgatcaaatggtgaaaacttactcgtgcatgatggaaaatgtgtctcatttgtgcact |
220 |
Q |
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| T |
32598342 |
ttatgaaaaaaatattgacaatgatttggcgatgaaacttattgatcaaatggcaaaaacttacttgtgcatgatggaaaatgtgtctcatttgtgcact |
32598441 |
T |
|
| Q |
221 |
atagacttgaccttgnnnnnnnn-aagcaaagtctgactaaaaattgttcactaaggaatcaaactcaggttcttctgaataattgcattaagaaaaccg |
319 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32598442 |
atagacttgaccttgtttttttttaagtaaagtctgactaaaaattgttcactaaggaatcaaactcaggttcttctgaataattgcattaagaaaaccg |
32598541 |
T |
|
| Q |
320 |
aattcatatgaattgaagaatgaaggtaaatggtagaaaagggtgaaaatgaaatgaaattgacccaaatcccattggttgagtactcctcattagttga |
419 |
Q |
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| T |
32598542 |
aattcatatgaattgaagaatgaaggtaaatggtagaaaaaggtgaaaatgaaatgaaattgacccaaatcccattggttgagtactcctcattagttca |
32598641 |
T |
|
| Q |
420 |
ccatattgttctactttctcttctctctcaagttttttctacgatgccagagagagtttatatagtattgttttctcactgctaccttcttttgtcatta |
519 |
Q |
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| T |
32598642 |
ccatattgttctactttctcttctctctcaagttttttctacgatgccagagagagtttatatagtattgttttctcactgctaccttcttttgtcatta |
32598741 |
T |
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| Q |
520 |
aattattatattattgttgcgtctgtgctcct |
551 |
Q |
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| T |
32598742 |
aattattatattattgttgcgtttgtgttcct |
32598773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 427
Target Start/End: Complemental strand, 35790344 - 35790287
Alignment:
| Q |
367 |
aatgaaatgaaattgacccaaatcccattggttgagtactcctcattagttgaccatattg |
427 |
Q |
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|||||||||||| |||||||||||| | ||||| ||| ||||||||||||||||||||| |
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| T |
35790344 |
aatgaaatgaaaatgacccaaatcctagtggttaagt---cctcattagttgaccatattg |
35790287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 35052502 - 35052461
Alignment:
| Q |
184 |
ctcgtgcatgatggaaaatgtgtctcatttgtgcactataga |
225 |
Q |
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| T |
35052502 |
ctcgtgcatgatgcaaaatttgtctcacttgtgcactataga |
35052461 |
T |
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