View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16487_low_3 (Length: 280)
Name: NF16487_low_3
Description: NF16487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16487_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 2928184 - 2928442
Alignment:
| Q |
1 |
cataccagatcattgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggctactgatcatgaacctatctata |
100 |
Q |
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| T |
2928184 |
cataccagatcactgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggccactgatcatgaacctatctata |
2928283 |
T |
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| Q |
101 |
aggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaagctctgtcaatgaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2928284 |
aggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaagctctatcaatgaaatg |
2928383 |
T |
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| Q |
201 |
aaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggta |
259 |
Q |
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| T |
2928384 |
aaaatgaatggtttagaaaagaaagataatgaattaatcataccgccggttgaaaggta |
2928442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 2310703 - 2310629
Alignment:
| Q |
185 |
ctctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggta |
259 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
2310703 |
ctctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattagtcataccgacgattgaaaggta |
2310629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 2310985 - 2310927
Alignment:
| Q |
96 |
ctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatattt |
154 |
Q |
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|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
2310985 |
ctataaggaagaataattaacataaacagagccattgctcataaattcttaaaatattt |
2310927 |
T |
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