View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16487_low_4 (Length: 248)

Name: NF16487_low_4
Description: NF16487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16487_low_4
NF16487_low_4
[»] chr5 (3 HSPs)
chr5 (1-240)||(41886483-41886722)
chr5 (1-179)||(41900370-41900548)
chr5 (50-179)||(32268537-32268666)
[»] chr3 (2 HSPs)
chr3 (60-179)||(51763325-51763444)
chr3 (57-94)||(1657614-1657651)
[»] scaffold1155 (1 HSPs)
scaffold1155 (60-164)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (60-164)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (60-164)||(30584-30688)
[»] chr7 (3 HSPs)
chr7 (79-179)||(10169004-10169104)
chr7 (79-179)||(10176529-10176629)
chr7 (117-179)||(10615715-10615777)
[»] chr1 (2 HSPs)
chr1 (116-180)||(19467422-19467486)
chr1 (147-179)||(17352692-17352724)
[»] chr4 (5 HSPs)
chr4 (70-173)||(553767-553870)
chr4 (116-179)||(21833268-21833331)
chr4 (57-94)||(645194-645231)
chr4 (33-93)||(1545952-1546012)
chr4 (147-179)||(3437642-3437674)
[»] chr6 (6 HSPs)
chr6 (117-179)||(6423907-6423969)
chr6 (125-179)||(8913420-8913474)
chr6 (50-99)||(9412203-9412252)
chr6 (57-94)||(11935970-11936007)
chr6 (57-94)||(11947950-11947987)
chr6 (117-173)||(19633108-19633164)
[»] chr8 (2 HSPs)
chr8 (50-99)||(17635581-17635630)
chr8 (70-99)||(17642880-17642909)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 41886483 - 41886722
Alignment:
Q  1 caatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatctt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886483 caatctcacctctctcgacctttctagcttccgcggtaacctcagcaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatctt 41886582  T
Q  101 tcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtttgaatgtgcaatttatttata 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  41886583 tcgtatcaacgtattattcccacaaatgggttgcgagtttttgccaaaaagattacaactttaacctctctcatttgttagaatgtgcaatttatttata 41886682  T
Q  201 gtactgatctattcctcatctctgattgtttccctttgct 240  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  41886683 gtactgacctattcctcatctctggttgtttccctttgct 41886722  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 41900370 - 41900548
Alignment:
Q  1 caatctcacctctctcgacctttctagcttccgtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcactcaatctt 100  Q
    |||||||||||| ||| | || ||  |||||  |||||||||||  ||||||||  | ||||||||| |||||||||||||||||||||||||||| ||     
T  41900370 caatctcacctccctcaatctctcgcgcttctatggtaacctcaacaaacttctttgtcaaatctctcattttccattgaaactcacatcactcaaactc 41900469  T
Q  101 tcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 179  Q
    ||  | ||| |  | || ||| ||  ||||||  ||| |||| |||||||||||||||||||||||||||||| |||||    
T  41900470 tcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 179
Target Start/End: Complemental strand, 32268666 - 32268537
Alignment:
Q  50 cttctcggccaaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttg-tgagtttttgccaaa 148  Q
    |||||| | |||||||||  |||||||||||||||||| ||||||||||| ||  |  || | || |||||||||| |||||||  || ||||| | ||     
T  32268666 cttctctgtcaaatctctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagacttttt-cgaag 32268568  T
Q  149 aagattacaactttgacctctctcatttgtt 179  Q
    ||||||||||||||||||||||||| |||||    
T  32268567 aagattacaactttgacctctctcacttgtt 32268537  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 179
Target Start/End: Original strand, 51763325 - 51763444
Alignment:
Q  60 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 159  Q
    ||||||||  ||| |||||||||||||||||||| ||||| ||  | || | ||   |||| |||||||||||| |||||||| |  |||||||||||||    
T  51763325 aaatctctcgtttcccattgaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagattacaac 51763424  T
Q  160 tttgacctctctcatttgtt 179  Q
    |||||| ||||||| |||||    
T  51763425 tttgacatctctcacttgtt 51763444  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 1657651 - 1657614
Alignment:
Q  57 gccaaatctctaattttccattgaaactcacatcactc 94  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  1657651 gccaaatctctagttttccattgagactcacatcactc 1657614  T

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Target: scaffold1155 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 1821 - 1925
Alignment:
Q  60 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 159  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 1920  T
Q  160 tttga 164  Q
    |||||    
T  1921 tttga 1925  T

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Target: scaffold0345 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 8395 - 8291
Alignment:
Q  60 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 159  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 8296  T
Q  160 tttga 164  Q
    |||||    
T  8295 tttga 8291  T

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Target: scaffold0105 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 30584 - 30688
Alignment:
Q  60 aaatctctaattttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaac 159  Q
    ||||||||  ||| |||||||| ||||||||||||||||| || || ||||  || |||||| || |||||||| |||||||  || |||| ||||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaac 30683  T
Q  160 tttga 164  Q
    |||||    
T  30684 tttga 30688  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 10169004 - 10169104
Alignment:
Q  79 gaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgt 178  Q
    |||||||||||||||| || |||| || ||| | |  |||||| ||||||||||| |||||||  |  |||| |||| ||||||||||||||||| ||||    
T  10169004 gaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgt 10169103  T
Q  179 t 179  Q
    |    
T  10169104 t 10169104  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 10176529 - 10176629
Alignment:
Q  79 gaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgt 178  Q
    |||||||||||||||| || |||| || ||| | |  |||||| ||||||||||| |||||||  |  |||| |||| ||||||||||||||||| ||||    
T  10176529 gaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgt 10176628  T
Q  179 t 179  Q
    |    
T  10176629 t 10176629  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 10615777 - 10615715
Alignment:
Q  117 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 179  Q
    ||||| ||||||||||  ||| |||  || ||||||||||||||||||||||||||| |||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgtt 10615715  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 19467422 - 19467486
Alignment:
Q  116 attcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgttt 180  Q
    |||||| ||||||||||| |||||||  |  |||| |||||||||||||||||||||| ||||||    
T  19467422 attcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgttt 19467486  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 17352724 - 17352692
Alignment:
Q  147 aaaagattacaactttgacctctctcatttgtt 179  Q
    ||||||||||||| |||||||||||||||||||    
T  17352724 aaaagattacaacattgacctctctcatttgtt 17352692  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 553870 - 553767
Alignment:
Q  70 ttttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctct 169  Q
    |||||||||||| |||||||||||| |||| ||  |  |||  |  |||||| ||||||||||| ||| |||  || |||| ||||||||||||||||||    
T  553870 ttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctct 553771  T
Q  170 ctca 173  Q
    ||||    
T  553770 ctca 553767  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 21833268 - 21833331
Alignment:
Q  116 attcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 179  Q
    |||||| || |||||||| ||||||||||  |||| ||||| |||||||||||||||| |||||    
T  21833268 attcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgtt 21833331  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 645231 - 645194
Alignment:
Q  57 gccaaatctctaattttccattgaaactcacatcactc 94  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  645231 gccaaatctctagttttccattgagactcacatcactc 645194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 1546012 - 1545952
Alignment:
Q  33 gtggtaacctcagtaaacttctcggccaaatctctaattttccattgaaactcacatcact 93  Q
    ||||| ||||||  || ||||||  ||||||||||| ||||||||||||||||||| ||||    
T  1546012 gtggtgacctcaacaagcttctctaccaaatctctacttttccattgaaactcacaacact 1545952  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 3437642 - 3437674
Alignment:
Q  147 aaaagattacaactttgacctctctcatttgtt 179  Q
    ||||||||||||||||||||||||||| |||||    
T  3437642 aaaagattacaactttgacctctctcagttgtt 3437674  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 6423969 - 6423907
Alignment:
Q  117 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 179  Q
    ||||||||||||||||| ||| |||  || |||| || ||||||||||||||||||| |||||    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 8913420 - 8913474
Alignment:
Q  125 aatgggttgtgagtttttgccaaaaagattacaactttgacctctctcatttgtt 179  Q
    |||||||||  ||||||  | |||||||||||||||||||||||||||| |||||    
T  8913420 aatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 9412252 - 9412203
Alignment:
Q  50 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 99  Q
    |||||||| |||||||||  |||||||||||||||| ||||||| |||||    
T  9412252 cttctcggtcaaatctctcgttttccattgaaactctcatcacttaatct 9412203  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 11935970 - 11936007
Alignment:
Q  57 gccaaatctctaattttccattgaaactcacatcactc 94  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11935970 gccaaatctctagttttccattgagactcacatcactc 11936007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 11947950 - 11947987
Alignment:
Q  57 gccaaatctctaattttccattgaaactcacatcactc 94  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  11947950 gccaaatctctagttttccattgagactcacatcactc 11947987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 19633164 - 19633108
Alignment:
Q  117 ttcccacaaatgggttgtgagtttttgccaaaaagattacaactttgacctctctca 173  Q
    ||||||||||||||||| ||| |||  || |||  ||||||||||||||||||||||    
T  19633164 ttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacctctctca 19633108  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 17635581 - 17635630
Alignment:
Q  50 cttctcggccaaatctctaattttccattgaaactcacatcactcaatct 99  Q
    |||||| || ||||||||  ||||||||||||||||| ||||||||||||    
T  17635581 cttctctgcgaaatctctccttttccattgaaactcatatcactcaatct 17635630  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 99
Target Start/End: Original strand, 17642880 - 17642909
Alignment:
Q  70 ttttccattgaaactcacatcactcaatct 99  Q
    ||||||||||||||||||||||||||||||    
T  17642880 ttttccattgaaactcacatcactcaatct 17642909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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