View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16488_low_1 (Length: 744)
Name: NF16488_low_1
Description: NF16488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16488_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 10 - 524
Target Start/End: Complemental strand, 12454394 - 12453879
Alignment:
| Q |
10 |
acatcatcacatcaagaatcaaacataacatacaaattgtannnnnnncttcctgatataaacttacattacattattacaaatatatatgaaaaattct |
109 |
Q |
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| T |
12454394 |
acatcatcacatcaagaatcaaacataacatacaaattgtattttt--cttcctgatataaacttacattacattattacaaatatatatgaaaaattct |
12454297 |
T |
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| Q |
110 |
tactcagcttcttcaacagcagcttcaattcgaagaagaacaaatccaacagcaacaccaacaagagtaagtccattcataatagctgcaatctgaaaaa |
209 |
Q |
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| T |
12454296 |
tactcagcttcttcaacagcagcttcaattcgaagaagaacaaatccaacagcaacaccaacaagagtaagtccattcataatagctgcaatctgaaaaa |
12454197 |
T |
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| Q |
210 |
tctcacctgcagcattacatgttgaagaacctgcacctcctcttcttcctccatttgatggatatttcaatgaactcgtcacttttgcaaaagcttgttc |
309 |
Q |
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| T |
12454196 |
tctcacctgcagcattacatgttgaagaacctgcacctcctcttcttcctccatttgatggatatttcaatgaactcatcacttttgcaaaagcttgttc |
12454097 |
T |
|
| Q |
310 |
agtgcacataggaactcctagtgatgtcacagtgctgttctgtgctttcaatccattgtatgaattcagtcctgtgataaacttcacattgttacccttc |
409 |
Q |
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| T |
12454096 |
agtgcacataggaactcctagtgatgtcacagtgctgttctgtgctttcaatccattgtatgaattcagtcctgtgataaacttgacattgttacccttc |
12453997 |
T |
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| Q |
410 |
ttagtactccttgatttggttccaataactgagcttcctacaacagtgattgtagatggagttgttgctgaggctgtagcca---tttttattatctgtg |
506 |
Q |
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| T |
12453996 |
ttagtactccttgatttggttccaataactgagcttcctacaacagtgattgtagatggagttgttgctgaggctgtagccattgttattattatctgtg |
12453897 |
T |
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| Q |
507 |
aaatatgaaaaaagttta |
524 |
Q |
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| T |
12453896 |
aaatatgaaaaaagttta |
12453879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 588 - 726
Target Start/End: Complemental strand, 12453815 - 12453673
Alignment:
| Q |
588 |
ccttggtttcttgaaatgtgtatagagttta----atggtaagggagttttgtatatttggattaaaagggagaaaaggataaggtgagatgagtatggt |
683 |
Q |
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||||||||| ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12453815 |
ccttggtttgttgaaatgtgtgtagagtttatgttatgggaagggagttttgtatatttggattaaaagggagaaaaggataaggtgagatgagtatggt |
12453716 |
T |
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| Q |
684 |
tggttgatataagaagagaatgtgatagattgtttgatgatac |
726 |
Q |
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| T |
12453715 |
tggttgatataagaagagaatgtgatagattgtttgatgatac |
12453673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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