View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16488_low_2 (Length: 539)
Name: NF16488_low_2
Description: NF16488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16488_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 152 - 524
Target Start/End: Original strand, 32679640 - 32680010
Alignment:
| Q |
152 |
aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaa |
251 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
32679640 |
aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccataaaggatgaaaaccaacaatacttgtttgttatcttaa |
32679739 |
T |
|
| Q |
252 |
atatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag |
351 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679740 |
atatcatgtaaaacacatcctaacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag |
32679839 |
T |
|
| Q |
352 |
ttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcatcttcatacaaactctcgctg |
451 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32679840 |
ttcaaataatgagcggaattataataccttatatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcgtcttcatacaaactctcgctg |
32679939 |
T |
|
| Q |
452 |
ttaaacacacacatacaaaacacgcatgtttaatcttcaacattcccattctggcagttcacactaaaaaact |
524 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679940 |
ttaa--acacacatacaaaacacgcatgtttaatcttcaacattcccattctggcagttcacactaaaaaact |
32680010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 32679630 - 32679676
Alignment:
| Q |
178 |
aaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaa |
225 |
Q |
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| T |
32679630 |
aaggatgaaaaggtttagaagtcaggtacaa-ccataaaggatgaaaa |
32679676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 214 - 484
Target Start/End: Original strand, 28136025 - 28136291
Alignment:
| Q |
214 |
aaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaa |
313 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28136025 |
aaaggatgaaagccaacaatacttatttgttatctcaaatatcatgtaaaacacatcataacagct-----acatgaagaaagagactccatatatgcaa |
28136119 |
T |
|
| Q |
314 |
aaat-agcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttgg |
412 |
Q |
| |
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||| ||||||||| ||| |||||||||| |||||||||||||||||||| ||| ||| |||||| |||| |||||||| || |||||||||||| |
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| T |
28136120 |
aaaacagcatcgcatagtcaccaatagaacatgtgacagttcaaataatgagcagaacaatactaccttggatacgagtagtgcggcaagttgcctttgg |
28136219 |
T |
|
| Q |
413 |
taatgatcaaactcctcatcttcatacaaactctcgctgttaaacacacacatacaaaacacgcatgtttaa |
484 |
Q |
| |
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| |||||||| |||| ||||| ||||||||||| || || |||||| ||||||||| ||| ||||||||| |
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| T |
28136220 |
tgctgatcaaaggcctcctcttcgtacaaactctcactatttaacacatacatacaaaccacacatgtttaa |
28136291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 28135839 - 28135930
Alignment:
| Q |
15 |
ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagat-gccaaaacacaaacca |
105 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| ||||||| ||| ||||| |||| | ||||||||||||| |
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| T |
28135839 |
ggcataggatagtgagtcattcagctcacccaagtaataaaatacctaagataaaggagcgaaaaaaaattagatagtaaaaacacaaacca |
28135930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 28135955 - 28136035
Alignment:
| Q |
107 |
gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa |
187 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||| |||||| |||||||||| | ||||||| | ||||||||||| |
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| T |
28135955 |
gaataataatatagggatatgaaaaaacataaggactctggtgattggtttagaagccgggtacaataaaaaaggatgaaa |
28136035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 9e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 242 - 453
Target Start/End: Complemental strand, 44806795 - 44806585
Alignment:
| Q |
242 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaa |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||||||||||| ||||||||| |
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|
| T |
44806795 |
gttatctcaaatatcatgtaaaacacatcataacagcttagctacttgacgaaagagactccgtatgtgcaaaaacagcatcgcacagttatcaatagaa |
44806696 |
T |
|
| Q |
342 |
cacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttggtaatgatcaaactcctcatcttcatacaa |
441 |
Q |
| |
|
|| ||||| |||||||||||||| ||| || | |||||| ||||||||| ||| || ||||||||||| | |||||||||||||||||||| ||||| |
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| T |
44806695 |
catgtgacaattcaaataatgagcagaa-tacactacctttgatacaagtaatgcggcaagttgcctttgatgctgatcaaactcctcatcttcgtacaa |
44806597 |
T |
|
| Q |
442 |
actctcgctgtt |
453 |
Q |
| |
|
|||||| ||||| |
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| T |
44806596 |
actctcactgtt |
44806585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 44807003 - 44806913
Alignment:
| Q |
15 |
ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagatgccaaaacacaaacca |
105 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||| | |||| |||||||| |
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|
| T |
44807003 |
ggcataggatagtgagtcattcaactcgcccaagtaataaaagacctaagataaaggagcgaagaaaaatcagatactaaaatacaaacca |
44806913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 44806873 - 44806806
Alignment:
| Q |
120 |
tggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa |
187 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||||| | ||||||| || |||| |||||| |
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|
| T |
44806873 |
tggatatgaaaaaacttaagtcctctggtgattggtttagaagccgggtacaatcaaaaagaatgaaa |
44806806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 189 - 355
Target Start/End: Complemental strand, 2230609 - 2230444
Alignment:
| Q |
189 |
ggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacat |
288 |
Q |
| |
|
|||||||||| ||||||||| | | |||||||||| || | |||| || |||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2230609 |
ggtttagaagccaggtacaatcaa-aaaggatgaaggccgaaaatatttatttgctatctcaaatatcatgtaaaacacatcataacagcttagccacat |
2230511 |
T |
|
| Q |
289 |
gaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttca |
355 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||| ||||||||||| |||||||||| |
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|
| T |
2230510 |
gaagaaagagactccatatatgcaaaaacagcatcgctcggttatcaatagaacatgtgacagttca |
2230444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 2230655 - 2230576
Alignment:
| Q |
107 |
gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaa |
186 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| || |||||||||| |
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|
| T |
2230655 |
gaataataatatatggatataaaaaaacttaaggcctctggtgattggtttagaagccaggtacaatcaaaaaggatgaa |
2230576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 2230772 - 2230704
Alignment:
| Q |
15 |
ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaa |
83 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||| ||| |||| |
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|
| T |
2230772 |
ggcataggatagtgagtcattcagctcgcccaagtaattaaagacctaagataaaggagcgaaaaaaaa |
2230704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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