View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16488_low_3 (Length: 359)
Name: NF16488_low_3
Description: NF16488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16488_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 5 - 344
Target Start/End: Original strand, 50101122 - 50101457
Alignment:
| Q |
5 |
aacacaacaacatatcagtgcaaaacaattctcaaaactctttctttttctctcaacaactttttcaaagtaataataatcacttgttgcgcgggaaagc |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101122 |
aacacaacaacatatcagtgcaaaacaattctcaaaactctctctttttctctcaacaactttttcaaagtaataataatcacttgttgcgcgggaaagc |
50101221 |
T |
|
| Q |
105 |
gcttcttatcaatccnnnnnnnnnnnnnnnnnactcgttcgttccttcgttcaccgtgaaactattcagttacggttgcgaaagaggaacgataacaatg |
204 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101222 |
gcttcttatcaatc----tctctctctctctcactcgttcgttccttcgttcaccgtgaaactattcagttacggttgcgaaagaggaacgataacaatg |
50101317 |
T |
|
| Q |
205 |
caaaccattgaagaagaagaagctgttggaagctatgttcaggattctccttcacatttcgagattttgatgctacgtcaacgttgggaactcgcttccg |
304 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50101318 |
caaaccattgaagaagaagaagctgttggaagcgatgttcaggattctccttcacatttcgagattttgaagctacgtcaacgttgggaactcgcttccg |
50101417 |
T |
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| Q |
305 |
ttctccatttccttgacgtaagatattcgcgtcattcatc |
344 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
50101418 |
ttctccatttccttgacgtaagatattcgcgttattcatc |
50101457 |
T |
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