View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16489_high_2 (Length: 646)
Name: NF16489_high_2
Description: NF16489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16489_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 21 - 637
Target Start/End: Complemental strand, 15527159 - 15526543
Alignment:
| Q |
21 |
agtggtagtattgagtttggcctacttaaaaaagtagcaaattatgttttatcgcacagtgccaagctcgatcgattagaaattgatgtgaaaggcgata |
120 |
Q |
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| T |
15527159 |
agtggtagtattgagtttggcctacttaaaaaagtagcaaattatgttttatcgcacagtgccaagctcgatcgattagaaattgatgtgaaaggcgata |
15527060 |
T |
|
| Q |
121 |
tatgtcatatcctaccttgcatttcttcgtctcagacgttaacatcacttaggctatccgtttcgcctaaaggtcgttataattattggagaacgttgtt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15527059 |
tatgtcatatcctaccttgcatttcttcgtctcagacgttaacatcacttaggctatccgtttcgcctaaaggtcgttataattattggagaacgttgtt |
15526960 |
T |
|
| Q |
221 |
tcctaactcacttgatttaccagcgttaacctgtctacatctaggaaattttgtcttttgcgccactgatgatggtcgaattgatcccttttcagccttt |
320 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15526959 |
tcctaactcactagatttaccagtgttaacctgtctacatctaggaaattttgtcttttgcgccactgatggtggtcgaattgatcccttttcagccttt |
15526860 |
T |
|
| Q |
321 |
aatagcttgagtgatttgatcattgataattgttcggtgaagggtgcaaatatcttgtgcatgttaagccagacactagttagcttaacgattcgtaatc |
420 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15526859 |
aatagattgagtgatttgatcattgataattgttcggtgaagggtgcaaatatcttgtgcatgttaagccagacactagttagcttaacgatacgtaatc |
15526760 |
T |
|
| Q |
421 |
attcattccataattacaaaatcgagctatctgctccaagcctttgtacatttgcttttacgggtactccttatcagacacttcttggaaccaatctttc |
520 |
Q |
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| T |
15526759 |
attcattccacaattaccaaatcgagctatctgctccaagccttcgtacatttgcttttacgggtactccttatcagacacttcttggaaccaatctttc |
15526660 |
T |
|
| Q |
521 |
ttctgtcaaaaaagtaattattgacgcggaaatgatggcaaattacttgatgcctcctttggttttactctcctggctgtctagtcttgctaatatagaa |
620 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15526659 |
ttctgtcaaaaaagtaattattgacgcggaaatgttggcaaattactcggtacctcctttggttttactctcctggctgtctagtcttgctaatatagaa |
15526560 |
T |
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| Q |
621 |
tcattgacggtctctgc |
637 |
Q |
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| T |
15526559 |
tcattgacggtctctgc |
15526543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 111 - 637
Target Start/End: Complemental strand, 36591200 - 36590674
Alignment:
| Q |
111 |
aaaggcgatatatgtcatatcctaccttgcatttcttcgtctcagacgttaacatcacttaggctatccgtttcgcctaaaggtcgttataattattgga |
210 |
Q |
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||||| ||||| |||||||| || ||||| ||||||||| || ||| ||||| || |||| ||| || |||||||| ||||| | |||||||| ||| |
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| T |
36591200 |
aaaggggatatttgtcatattctgccttgtgtttcttcgtgtcggactttaacgtctcttaagctttctgtttcgcccaaagggaggcataattatggga |
36591101 |
T |
|
| Q |
211 |
gaacgttgtttcctaactcacttgatttaccagcgttaacctgtctacatctaggaaattttgtcttttgcgccactgatgatggtcgaattgatccctt |
310 |
Q |
| |
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||||||||||||| || ||| | ||||| |||||||||||| || | |||||||| ||||| |||||||| || | |||| | || |||| ||| ||||| |
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| T |
36591100 |
gaacgttgtttccaaaatcattggatttgccagcgttaaccagtttgcatctagggaatttcgtcttttgtgctagtgataaaggccgaactgagccctt |
36591001 |
T |
|
| Q |
311 |
ttcagcctttaatagcttgagtgatttgatcattgataattgttcggtgaagggtgcaaatatcttgtgcatgttaagccagacactagttagcttaacg |
410 |
Q |
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||| | ||||| | |||| | |||| ||||||| |||||| ||||||||| ||| | || | ||||| ||||| ||||||| || | || || |
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| T |
36591000 |
ttcgggttttaacaagttgaatagtttggtcattgacaattgtacggtgaaggatgcgcagattctttgcatattaagtgagacacttgtcaatttgact |
36590901 |
T |
|
| Q |
411 |
attcgtaatcattcattccataattacaaaatcgagctatctgctccaagcctttgtacatttgcttttacgggtactccttatcagacacttcttggaa |
510 |
Q |
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|| ||||||||||| | | |||||||||||| ||||| |||||||| ||| | || ||||| ||||| || || |||||||||| |||| ||| | |
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| T |
36590900 |
atgcgtaatcattcttctgacgtttacaaaatcgaactatccgctccaagtcttagcacgtttgcgtttaccggaaccccttatcagaaactttgtggga |
36590801 |
T |
|
| Q |
511 |
ccaatctttcttctgtcaaaaaagtaattattgacgcggaaatgatggcaaattac-ttgatgcctcctttggttttactctcctggctgtctag-tctt |
608 |
Q |
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||||||||| || || ||| | || | |||||| || |||||| || | || ||| ||| ||||||||||||||| || |||||||| ||| ||| |
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| T |
36590800 |
gcaatctttcctcggttaaacaggtgaatattgatgcagaaatgttgtctaactacactga-gcctcctttggttttgcttagctggctgt-tagaactt |
36590703 |
T |
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| Q |
609 |
gctaatatagaatcattgacggtctctgc |
637 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
36590702 |
gctaatatcaaatcattgacggtctctgc |
36590674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 15582015 - 15581944
Alignment:
| Q |
60 |
aattatgttttatcgcacagtgccaagctcgatcgattagaaattgatgtgaaaggcgatatatgtcatatc |
131 |
Q |
| |
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|||||||||||||| |||| |||| | ||| ||||| ||| | ||||||| ||||||||||||||||||||| |
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| T |
15582015 |
aattatgttttatctcacaatgcccaactcaatcgactaggatttgatgttaaaggcgatatatgtcatatc |
15581944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 473
Target Start/End: Complemental strand, 42602346 - 42602310
Alignment:
| Q |
437 |
caaaatcgagctatctgctccaagcctttgtacattt |
473 |
Q |
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| T |
42602346 |
caaaatcgagttatctgctccaagcctttgtgcattt |
42602310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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