View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16489_high_3 (Length: 410)
Name: NF16489_high_3
Description: NF16489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16489_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 394
Target Start/End: Original strand, 14003624 - 14004009
Alignment:
| Q |
9 |
agcacagaaaacccaccaagacatttcaaatctaacaatttaattttaactaactttgtagtttcattcggacatggccaattgtcaaagagaacagagg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14003624 |
agcacagaaaacccaccaagacatttcaaatctaacaatttaattttaactaactttgtagtttcattcggacatggtcaattgtcaaagagaacagagg |
14003723 |
T |
|
| Q |
109 |
gtccatatgcttcaattttaatctcatattgttacaaatcatttctttaacttgtgtaggttcaatttgactgtaagtgatcgtagatgtggagaaaatg |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003724 |
gtccatatgcttcaattttattctcatattgttacaaatcatttctttaacttgtgtaggttcaatttgactgtaagtgatcgtagatgtggagaaaatg |
14003823 |
T |
|
| Q |
209 |
ctgaagttggcgtcaaccactattaacattgtatgcaaaacgcacttctaagagggtcacacacttatggggcttttcataaaaaaccattgatatacat |
308 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003824 |
ctgaagttggcgtcagccaccattaacattgtatgcaaaacgcacttctaagagggtcacacacttatggggcttttcataaaaaaccattgatatacat |
14003923 |
T |
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| Q |
309 |
attgagcaactaaaaataacattaggataccaaatagaaagcaaaatagggaaaacataaaacaccaagaactaaatagatgttag |
394 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003924 |
attgagcaactaaatataacattaggataccaaatagaaagcaaaatagggaaaacataaaacaccaagaactaaatagatgttag |
14004009 |
T |
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