View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16489_low_4 (Length: 335)
Name: NF16489_low_4
Description: NF16489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16489_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 49599136 - 49598929
Alignment:
| Q |
18 |
ttcactcttccttctcgctctcaaaacctctactcttcaattgtcaccgcctcttccaaaaagaaaaacaataaggttatctcttttcaacaatattatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49599136 |
ttcactcttccttctcgctctcaaaacctctactcttcaattgtcaccgcctcttccaaaaagaaaaacaataaggttatctcttttcaacaatattatt |
49599037 |
T |
|
| Q |
118 |
ccaattccaaagccaatacaactcaatgattcatacttcacaattgtctaatttatattatgctttttaatttttacagaaaaaattgactcatgttacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49599036 |
ccaattccaaagccaatacaactcaatgattcatacttcacaattgtctaatttatattatgctttttaatttttacagaaaaaattgactcatgttacc |
49598937 |
T |
|
| Q |
218 |
aaggggaa |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
49598936 |
aaggggaa |
49598929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 49598898 - 49598834
Alignment:
| Q |
253 |
tgcttttgagttgcttttcaagcaacttgaagaagatctcaaaaacgatgatgatttgtctaaag |
317 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49598898 |
tgcttttgagttgctattcaagaaacttgaagaagatctcaaaaacgatgatgatttgtctaaag |
49598834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University