View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1649-INSERTION-3 (Length: 736)

Name: NF1649-INSERTION-3
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1649-INSERTION-3
NF1649-INSERTION-3
[»] chr3 (28 HSPs)
chr3 (638-730)||(19659142-19659234)
chr3 (644-730)||(5348130-5348216)
chr3 (640-724)||(19631290-19631374)
chr3 (655-725)||(4657439-4657509)
chr3 (645-730)||(11832277-11832362)
chr3 (638-730)||(25660880-25660973)
chr3 (638-730)||(25667285-25667378)
chr3 (638-730)||(25673690-25673783)
chr3 (645-725)||(12252084-12252164)
chr3 (640-725)||(11829211-11829296)
chr3 (644-705)||(15044580-15044641)
chr3 (638-730)||(25680115-25680208)
chr3 (638-730)||(25688419-25688512)
chr3 (645-725)||(30104254-30104334)
chr3 (640-730)||(10935217-10935307)
chr3 (665-725)||(7770018-7770078)
chr3 (640-688)||(16218278-16218326)
chr3 (638-725)||(4161586-4161672)
chr3 (644-730)||(12695502-12695587)
chr3 (643-684)||(15540756-15540797)
chr3 (657-725)||(6224458-6224525)
chr3 (637-681)||(13440903-13440947)
chr3 (657-712)||(20421653-20421708)
chr3 (638-720)||(17394186-17394268)
chr3 (664-730)||(17580658-17580724)
chr3 (640-726)||(19431718-19431803)
chr3 (642-730)||(10726823-10726908)
chr3 (643-724)||(14860609-14860689)
[»] chr8 (14 HSPs)
chr8 (656-731)||(25281802-25281877)
chr8 (640-730)||(23539657-23539747)
chr8 (643-724)||(18829983-18830064)
chr8 (637-725)||(24625617-24625705)
chr8 (640-715)||(23543193-23543268)
chr8 (644-725)||(16090627-16090708)
chr8 (642-718)||(14392971-14393046)
chr8 (645-725)||(23241440-23241520)
chr8 (655-730)||(15887048-15887123)
chr8 (640-721)||(20496153-20496234)
chr8 (645-726)||(18829240-18829321)
chr8 (640-680)||(25264020-25264060)
chr8 (640-686)||(15929673-15929719)
chr8 (675-725)||(22314878-22314928)
[»] chr1 (9 HSPs)
chr1 (638-725)||(23475180-23475267)
chr1 (642-730)||(21720992-21721080)
chr1 (644-725)||(18621226-18621305)
chr1 (640-722)||(20408745-20408827)
chr1 (638-725)||(22615863-22615950)
chr1 (645-705)||(21424042-21424102)
chr1 (655-712)||(21981572-21981629)
chr1 (640-708)||(21403160-21403228)
chr1 (641-718)||(21682417-21682495)
[»] scaffold0228 (3 HSPs)
scaffold0228 (640-730)||(6316-6406)
scaffold0228 (640-730)||(13898-13988)
scaffold0228 (640-730)||(23850-23940)
[»] chr5 (15 HSPs)
chr5 (640-725)||(17170325-17170410)
chr5 (645-726)||(18223375-18223456)
chr5 (642-730)||(19315702-19315790)
chr5 (645-725)||(24516764-24516844)
chr5 (645-725)||(22826936-22827016)
chr5 (642-724)||(19858749-19858831)
chr5 (638-724)||(22446783-22446869)
chr5 (643-705)||(10176021-10176081)
chr5 (639-710)||(31480307-31480377)
chr5 (645-725)||(26260408-26260488)
chr5 (640-726)||(20726329-20726413)
chr5 (644-686)||(17364851-17364893)
chr5 (644-711)||(22053212-22053278)
chr5 (638-719)||(25243028-25243109)
chr5 (638-719)||(25307180-25307261)
[»] chr6 (22 HSPs)
chr6 (640-730)||(16896789-16896879)
chr6 (645-730)||(14355775-14355860)
chr6 (637-725)||(13310652-13310739)
chr6 (644-725)||(14565892-14565973)
chr6 (640-725)||(18027827-18027912)
chr6 (638-712)||(13562477-13562551)
chr6 (645-725)||(18558143-18558223)
chr6 (638-721)||(19969028-19969109)
chr6 (643-722)||(19976592-19976671)
chr6 (658-725)||(14894541-14894608)
chr6 (660-726)||(4176997-4177062)
chr6 (640-726)||(14672248-14672334)
chr6 (657-726)||(15514654-15514721)
chr6 (655-694)||(10975683-10975722)
chr6 (648-730)||(5484119-5484201)
chr6 (669-730)||(19980945-19981006)
chr6 (646-705)||(9296635-9296693)
chr6 (643-725)||(9521712-9521792)
chr6 (678-725)||(17013080-17013127)
chr6 (638-725)||(23301291-23301378)
chr6 (659-725)||(18733719-18733784)
chr6 (660-726)||(31466954-31467019)
[»] scaffold0111 (2 HSPs)
scaffold0111 (640-725)||(25292-25377)
scaffold0111 (638-686)||(29225-29273)
[»] scaffold0018 (1 HSPs)
scaffold0018 (644-725)||(61849-61930)
[»] scaffold0039 (1 HSPs)
scaffold0039 (638-730)||(8613-8705)
[»] chr7 (14 HSPs)
chr7 (638-730)||(11773285-11773377)
chr7 (640-730)||(13761022-13761112)
chr7 (641-730)||(3169557-3169646)
chr7 (637-725)||(18083266-18083354)
chr7 (641-731)||(29740550-29740639)
chr7 (640-724)||(16095580-16095664)
chr7 (640-726)||(18363089-18363175)
chr7 (637-725)||(17923282-17923370)
chr7 (637-726)||(19070662-19070750)
chr7 (640-688)||(16197719-16197767)
chr7 (640-726)||(5545-5630)
chr7 (673-726)||(4485520-4485573)
chr7 (640-684)||(8326472-8326516)
chr7 (641-686)||(13146672-13146717)
[»] scaffold0964 (1 HSPs)
scaffold0964 (637-730)||(2915-3008)
[»] scaffold0050 (1 HSPs)
scaffold0050 (642-725)||(77993-78076)
[»] chr2 (12 HSPs)
chr2 (644-731)||(20511061-20511148)
chr2 (640-730)||(18995989-18996079)
chr2 (640-730)||(24282364-24282453)
chr2 (640-725)||(28774988-28775072)
chr2 (655-725)||(19285328-19285397)
chr2 (672-725)||(19901698-19901751)
chr2 (644-725)||(24699272-24699353)
chr2 (638-725)||(21654960-21655047)
chr2 (638-725)||(24689915-24690002)
chr2 (667-730)||(27354277-27354340)
chr2 (637-730)||(34133550-34133642)
chr2 (638-724)||(21909410-21909496)
[»] chr4 (14 HSPs)
chr4 (640-730)||(16571910-16572000)
chr4 (645-730)||(28801546-28801630)
chr4 (642-725)||(21982710-21982793)
chr4 (643-724)||(9273385-9273466)
chr4 (640-725)||(15712171-15712258)
chr4 (644-726)||(9652747-9652827)
chr4 (644-686)||(11777004-11777046)
chr4 (643-724)||(9253414-9253495)
chr4 (637-694)||(16684900-16684957)
chr4 (662-731)||(6942864-6942935)
chr4 (665-725)||(12333994-12334054)
chr4 (645-712)||(9567330-9567397)
chr4 (643-725)||(19890336-19890418)
chr4 (638-703)||(23269250-23269315)
[»] scaffold0014 (1 HSPs)
scaffold0014 (642-725)||(202204-202286)
[»] scaffold0007 (1 HSPs)
scaffold0007 (638-705)||(204092-204159)
[»] scaffold0196 (1 HSPs)
scaffold0196 (641-725)||(17701-17784)
[»] scaffold0193 (1 HSPs)
scaffold0193 (645-724)||(19658-19737)
[»] scaffold0186 (1 HSPs)
scaffold0186 (646-725)||(19818-19897)
[»] scaffold0004 (1 HSPs)
scaffold0004 (638-725)||(370687-370774)
[»] scaffold0112 (1 HSPs)
scaffold0112 (657-726)||(13962-14031)
[»] scaffold0772 (1 HSPs)
scaffold0772 (644-725)||(2111-2191)
[»] scaffold0040 (1 HSPs)
scaffold0040 (638-694)||(42367-42423)
[»] scaffold0058 (1 HSPs)
scaffold0058 (641-731)||(73540-73628)
[»] scaffold0205 (1 HSPs)
scaffold0205 (645-707)||(8755-8817)
[»] scaffold0183 (2 HSPs)
scaffold0183 (660-726)||(11821-11886)
scaffold0183 (675-730)||(20109-20164)
[»] scaffold0013 (1 HSPs)
scaffold0013 (637-726)||(6439-6528)
[»] scaffold0331 (1 HSPs)
scaffold0331 (673-726)||(5200-5253)
[»] scaffold0305 (1 HSPs)
scaffold0305 (676-725)||(10299-10348)
[»] scaffold0001 (2 HSPs)
scaffold0001 (640-688)||(151223-151271)
scaffold0001 (644-686)||(155616-155658)
[»] scaffold0133 (1 HSPs)
scaffold0133 (678-725)||(26105-26152)
[»] scaffold0020 (1 HSPs)
scaffold0020 (646-688)||(109106-109148)
[»] scaffold0233 (1 HSPs)
scaffold0233 (644-725)||(16412-16493)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 638 - 730
Target Start/End: Original strand, 19659142 - 19659234
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||| ||||    
T  19659142 agcccgtttttcgctagaattattttaattatttattatgtgtgtttatatgtgcttttgtgtgattaattgtctatgtgtgtattttattcg 19659234  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 644 - 730
Target Start/End: Complemental strand, 5348216 - 5348130
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||||| |||||||||||| ||||    
T  5348216 tttttcgctagaattattttaattatttattatgtgtgtttatatgtacttgtatatgattaattgtctatgtgtgtattttattcg 5348130  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 640 - 724
Target Start/End: Original strand, 19631290 - 19631374
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattt 724  Q
    ||||||||| |||| |||| ||||| ||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||    
T  19631290 cccgttttttgctagaattgttttatttatttattatgtgtgtttatatgtgcttgtgtgtgattaattgtctctgtgtgtattt 19631374  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 655 - 725
Target Start/End: Complemental strand, 4657509 - 4657439
Alignment:
Q  655 aattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||   ||||||||||    
T  4657509 aattattttaattatttattatgtgtgtttatatgtgcttgtatgtgattaattgtctccatgtgtatttt 4657439  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 645 - 730
Target Start/End: Original strand, 11832277 - 11832362
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||| |||||||||||||| || |||||| ||||||||| ||||| |||||||||| |||||| | |||||||||| ||||    
T  11832277 ttttcgctagaattattttaattaatttttatgtatgtttatatgtgcttgtatgtgattatttgtctctatgtgtattttattcg 11832362  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 638 - 730
Target Start/End: Original strand, 25660880 - 25660973
Alignment:
Q  638 agcccgtttttcgctataattattttaatt-atttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||||||| ||||||||| ||| | ||||||||| ||||||||| ||||| |||||| ||||||| || |||||||||||| ||||    
T  25660880 agcccgtttttcgctagaattatttttatttaattattatgtatgtttatatgtgcttgtatgtgcttaattgcctctgtgtgtattttattcg 25660973  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 638 - 730
Target Start/End: Original strand, 25667285 - 25667378
Alignment:
Q  638 agcccgtttttcgctataattattttaatt-atttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||||||| ||||||||| ||| | ||||||||| ||||||||| ||||| |||||| ||||||| || |||||||||||| ||||    
T  25667285 agcccgtttttcgctagaattatttttatttaattattatgtatgtttatatgtgcttgtatgtgcttaattgcctctgtgtgtattttattcg 25667378  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 638 - 730
Target Start/End: Original strand, 25673690 - 25673783
Alignment:
Q  638 agcccgtttttcgctataattattttaatt-atttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||||||| ||||||||| ||| | ||||||||| ||||||||| ||||| |||||| ||||||| || |||||||||||| ||||    
T  25673690 agcccgtttttcgctagaattatttttatttaattattatgtatgtttatatgtgcttgtatgtgcttaattgcctctgtgtgtattttattcg 25673783  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 645 - 725
Target Start/End: Original strand, 12252084 - 12252164
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||| |||||||||||||| |||||||||||||| |||| ||||| |||| ||||| |||||| | ||||||||||    
T  12252084 ttttcgctagaattattttaattaattattatgtgtgttcatatgtgcttgtatgcgattatttgtctctatgtgtatttt 12252164  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 640 - 725
Target Start/End: Complemental strand, 11829296 - 11829211
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||| ||||||||| | ||| ||| |||| ||||||||||||||||||||| ||| |||||||||| || ||| ||||||||||||    
T  11829296 cccgattttcgctagatttacttttattaattattatgtgtgtttatatattcttgtatgtgattatttatctctgtgtgtatttt 11829211  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 644 - 705
Target Start/End: Original strand, 15044580 - 15044641
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgatta 705  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  15044580 ttttttgctataattattttaattatttattatatgtgtttatatgtgctcgtatgtgatta 15044641  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 730
Target Start/End: Original strand, 25680115 - 25680208
Alignment:
Q  638 agcccgtttttcgctataatta-ttttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||||||| ||||| ||||| ||| ||||||||| ||||||||| ||||| |||||| ||||||| || ||| |||||||| ||||    
T  25680115 agcccgtttttcgctagaattatttttatttaattattatgtatgtttatatgtgcttgtatgtgcttaattgcctctgtatgtattttattcg 25680208  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 730
Target Start/End: Original strand, 25688419 - 25688512
Alignment:
Q  638 agcccgtttttcgctataatta-ttttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||||||| ||||| ||||| ||| ||||||||| ||||||||| ||||| |||||| ||||||| || ||| |||||||| ||||    
T  25688419 agcccgtttttcgctagaattatttttatttaattattatgtatgtttatatgtgcttgtatgtgcttaattgcctctgtatgtattttattcg 25688512  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 645 - 725
Target Start/End: Original strand, 30104254 - 30104334
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||| |||| |||||||||||||| | ||||||||||||||||| || || ||||||||||  ||| ||||||||||||||    
T  30104254 tttttgctagaattattttaattaatgattatgtgtgtttatatgtgtttgtatgtgattatctgtttttgtgtgtatttt 30104334  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 640 - 730
Target Start/End: Complemental strand, 10935307 - 10935217
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||| |||| | |||||||||||| |||||| ||||||| |||| || || | |||||||| ||| ||||||||||||||| ||||    
T  10935307 cccgttttttgctagatttattttaattaattattaagtgtgttaatatgtgtttatgtgtgattatttgcctttgtgtgtattttattcg 10935217  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 725
Target Start/End: Original strand, 7770018 - 7770078
Alignment:
Q  665 attatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||||||||||||| ||| ||||| ||||||||| ||||||| || |||||||||    
T  7770018 attatttattatgtgtgtttgtatgtgcttgtatgtgatttattgtctctgcgtgtatttt 7770078  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 688
Target Start/End: Original strand, 16218278 - 16218326
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatat 688  Q
    |||||||||||||| || |||||||||||||||||||||||||| ||||    
T  16218278 cccgtttttcgctagaaatattttaattatttattatgtgtgttgatat 16218326  T

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Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 725
Target Start/End: Original strand, 4161586 - 4161672
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||| ||||||||| | ||||||||||| ||| | || ||||||| ||||||||| |||||||||||||| || ||||| ||||||    
T  4161586 agcccgattttcgctagatttattttaattgttt-taatatgtgtttttatatgcttttatgtgattaattgcctctgtgtatatttt 4161672  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 730
Target Start/End: Original strand, 12695502 - 12695587
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||| ||||||||||||||| | |||| |||||| |||| |||||  |||||||| ||||||| |||||| ||||| ||||    
T  12695502 tttttcgctagaattattttaattatctcttatatgtgttgatatgtgcttgcatgtgatt-attgtctctgtgtgaattttattcg 12695587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 684
Target Start/End: Complemental strand, 15540797 - 15540756
Alignment:
Q  643 gtttttcgctataattattttaattatttattatgtgtgttt 684  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  15540797 gtttttcactaaaattattttaattatttattatgtgtgttt 15540756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 657 - 725
Target Start/End: Original strand, 6224458 - 6224525
Alignment:
Q  657 ttattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||| ||| | || ||||||| ||||||||| |||||||||||||| || ||||||||||||    
T  6224458 ttattttaattgttt-taatatgtgtttttatatgcttttatgtgattaattgcctctgtgtgtatttt 6224525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 637 - 681
Target Start/End: Complemental strand, 13440947 - 13440903
Alignment:
Q  637 tagcccgtttttcgctataattattttaattatttattatgtgtg 681  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||    
T  13440947 tagcccgtttttcgctagaatcattttaattatttattatatgtg 13440903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 712
Target Start/End: Complemental strand, 20421708 - 20421653
Alignment:
Q  657 ttattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtct 712  Q
    |||||||||||| || |||| ||||||||||| ||||| || ||||||||||||||    
T  20421708 ttattttaattaatttttatatgtgtttatatgtgcttgtacgtgattaattgtct 20421653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 638 - 720
Target Start/End: Complemental strand, 17394268 - 17394186
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgt 720  Q
    |||||| |||||| || | ||||||| ||| ||||||||  |||||||||||||||| | |||||||| ||| || |||||||    
T  17394268 agcccgattttcgttaaatttatttttattttttattataagtgtttatatatgcttgtgtgtgattatttgcctatgtgtgt 17394186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 17580658 - 17580724
Alignment:
Q  664 aattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||||||||||||||||  | || | |||||||| |||||| | |||||||||| ||||    
T  17580658 aattatttattatgtgtgtttatatgcgtttgtgtgtgattatttgtctatttgtgtattttattcg 17580724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 726
Target Start/End: Complemental strand, 19431803 - 19431718
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||||||||||||| | |||||||||||| || || | ||||||||||| ||||| |||||||||| ||| || ||||  |||||||    
T  19431803 cccgtttttcgctagatttattttaattaattttt-tatgtgtttatatgtgcttgtatgtgattatttgcctatgtgaatattttg 19431718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 730
Target Start/End: Complemental strand, 10726908 - 10726823
Alignment:
Q  642 cgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||| || ||||||| |||||||||||||||  ||||||  |||| ||| |||||| ||| |||||| |||||||| ||||    
T  10726908 cgtttttcgctagaactatttta-ttatttattatgtgt--ttatatgcgcttgtatatgattacttgactttgtatgtattttattcg 10726823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 724
Target Start/End: Original strand, 14860609 - 14860689
Alignment:
Q  643 gtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattt 724  Q
    ||||||||| | |||||||||||||||||||||| |||   |||||||| || | ||||||| ||||| ||||| |||||||    
T  14860609 gtttttcgccagaattattttaattatttattatatgtaactatatatgtttatgtgtgatttattgt-tttgtttgtattt 14860689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 656 - 731
Target Start/End: Complemental strand, 25281877 - 25281802
Alignment:
Q  656 attattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcga 731  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||    
T  25281877 attattttaattatttattatgtgtgtttatatgtgcttgtatgtgattaattgtctttgtgtgtattttattcga 25281802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 640 - 730
Target Start/End: Original strand, 23539657 - 23539747
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| || ||| |||||||||||| ||||    
T  23539657 cccgtttttcgctataattattttaattatttattatgtgtgtttatatgcgcttgtatgtgattatttatctatgtgtgtattttattcg 23539747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 643 - 724
Target Start/End: Original strand, 18829983 - 18830064
Alignment:
Q  643 gtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattt 724  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||| |||||||||||    
T  18829983 gtttttcgctataattattttaattatttattatgtgtatttatatgtgcttgtatgtaattaattgtctctgtgtgtattt 18830064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 637 - 725
Target Start/End: Complemental strand, 24625705 - 24625617
Alignment:
Q  637 tagcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||| ||||||||| |||||||||| ||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||||||||||    
T  24625705 tagcccgattttcgctagaattattttatttatttattatatgtgtttatatgtgcttgtatgtgattatttgtctctgtgtgtatttt 24625617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 640 - 715
Target Start/End: Complemental strand, 23543268 - 23543193
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttg 715  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  23543268 cccgttttttgctagaattattttaattatttattatgtgtgtttatatgtgcttatatatgattaattgtctttg 23543193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 644 - 725
Target Start/End: Original strand, 16090627 - 16090708
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||| |||||||||||||||||||||||||||| |||||  ||||   ||||||||||||||||||||||||||||    
T  16090627 tttttcgctagaattattttaattatttattatgtgtgtctatatgcgcttgcgtgtgattaattgtctttgtgtgtatttt 16090708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 642 - 718
Target Start/End: Original strand, 14392971 - 14393046
Alignment:
Q  642 cgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgt 718  Q
    |||||||||||| | |||||||||||||||||||| ||||||||| |||||||  |||||||||||||||| |||||    
T  14392971 cgtttttcgctagatttattttaattatttattatatgtgtttat-tatgcttgcatgtgattaattgtctgtgtgt 14393046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 645 - 725
Target Start/End: Original strand, 23241440 - 23241520
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||| |||| |||||||||| ||||||||||||||| |||| || ||||| | ||||||||||||||||||| ||||||||    
T  23241440 ttttggctaaaattattttatttatttattatgtgtatttacatgtgcttgtgtgtgattaattgtctttgtttgtatttt 23241520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 655 - 730
Target Start/End: Complemental strand, 15887123 - 15887048
Alignment:
Q  655 aattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||||||||||||||||| ||||||||||   ||| ||||||||||||||||| ||||| |||||| ||||    
T  15887123 aattattttaattatttattatgcgtgtttatatgcacttgtatgtgattaattgtctctgtgtatattttattcg 15887048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 640 - 721
Target Start/End: Original strand, 20496153 - 20496234
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgta 721  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||| | ||||| | | ||||||||||||| ||| ||||    
T  20496153 cccgattttcgctagaattattttaattaattattatgtgtgtttatttgtgcttgtgtatgattaattgtctctgtatgta 20496234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 645 - 726
Target Start/End: Complemental strand, 18829321 - 18829240
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    ||||| ||| |||||||||||||||||| | |||| |||||||| |||||||||||| ||| || ||||| ||| |||||||    
T  18829321 ttttctctagaattattttaattatttagtgtgtgcgtttatatgtgcttctatgtggttatttatctttttgtatattttg 18829240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 640 - 680
Target Start/End: Complemental strand, 25264060 - 25264020
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgt 680  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  25264060 cccgtttttcgatagaattattttaattatttattatgtgt 25264020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 686
Target Start/End: Complemental strand, 15929719 - 15929673
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttat 686  Q
    |||||||||||||| |||||||||| ||||||||||| | |||||||    
T  15929719 cccgtttttcgctaaaattattttatttatttattatatttgtttat 15929673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 725
Target Start/End: Complemental strand, 22314928 - 22314878
Alignment:
Q  675 atgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||||| ||||||  |||||||||||||| || ||||||||||||    
T  22314928 atgtgtgtttatttatgctcgtatgtgattaattgcctatgtgtgtatttt 22314878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 638 - 725
Target Start/End: Original strand, 23475180 - 23475267
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||    
T  23475180 agcccatttttcgctagaattattttaattatttattatgtgtgattatatgtgcttgtatgtgattaattgtctctgtgtgtatttt 23475267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 642 - 730
Target Start/End: Complemental strand, 21721080 - 21720992
Alignment:
Q  642 cgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||| ||| | |||||||||||||||||||||||||||| ||||  ||||||||||||||||| |||||||||||| ||||    
T  21721080 cgtttttcgctagaatcactttaattatttattatgtgtgtttatatgtgctcgtatgtgattaattgtctctgtgtgtattttattcg 21720992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 644 - 725
Target Start/End: Original strand, 18621226 - 18621305
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||| |||| |||  |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  18621226 tttttcgctagaatttttt--attatttattatgtgtgtttatatgtgcttgtatgtgattaattgtctctgtgtgtatttt 18621305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 640 - 722
Target Start/End: Complemental strand, 20408827 - 20408745
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtat 722  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |  || | |||||||| |||||| |||||||||    
T  20408827 cccgtttttcgctataattattttaattacttattatgtgtgtttatatgtttttgtgtgtgattatttgtctatgtgtgtat 20408745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 638 - 725
Target Start/End: Complemental strand, 22615950 - 22615863
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||||||||||  | |||||||||||||||||||||||||||||  |||| |||||||||| || |||||  |||||||||    
T  22615950 agcccgtttttcgctatagatgttttaattatttattatgtgtgtttatatgcgcttgtatgtgattatttatctttaagtgtatttt 22615863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 645 - 705
Target Start/End: Complemental strand, 21424102 - 21424042
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgatta 705  Q
    ||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  21424102 ttttcgctagaattattttaattaattattatgtgtgtttatatgtgcttgtatgtgatta 21424042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 655 - 712
Target Start/End: Complemental strand, 21981629 - 21981572
Alignment:
Q  655 aattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtct 712  Q
    |||||||||||||| |||||||||||||| |||| ||||| |||||||||| ||||||    
T  21981629 aattattttaattaattattatgtgtgttcatatgtgcttgtatgtgattatttgtct 21981572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 708
Target Start/End: Complemental strand, 21403228 - 21403160
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaatt 708  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||||   | ||| |||||||||||||    
T  21403228 cccgttttttactagaattattttaattatttattatgtgtgtttattggttcttgtatgtgattaatt 21403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 718
Target Start/End: Complemental strand, 21682495 - 21682417
Alignment:
Q  641 ccgtttttcgctataattatttt-aattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgt 718  Q
    ||||||||||||| ||||||||| |||||||  ||||||| |||||||| || || |  ||||||||||||||||||||    
T  21682495 ccgtttttcgctagaattattttgaattattgcttatgtgcgtttatatgtgtttatgcgtgattaattgtctttgtgt 21682417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 640 - 730
Target Start/End: Original strand, 6316 - 6406
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||||| ||||    
T  6316 cccgattttcgctagaattattttaattatttattatgtgtgtttatatgtgcttgtatgtgattatttgtctctgtgtgtattttattcg 6406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 640 - 730
Target Start/End: Original strand, 13898 - 13988
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||||| ||||    
T  13898 cccgattttcgctagaattattttaattatttattatgtgtgtttatatgtgcttgtatgtgattatttgtctctgtgtgtattttattcg 13988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 640 - 730
Target Start/End: Original strand, 23850 - 23940
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||||| ||||    
T  23850 cccgattttcgctagaattattttaattatttattatgtgtgtttatatgtgcttgtatgtgattatttgtctctgtgtgtattttattcg 23940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 640 - 725
Target Start/End: Complemental strand, 17170410 - 17170325
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||| ||||||||||||    
T  17170410 cccgtttttctctacaattattttaattatttattatgtgtgtttatatgcgcttgtatgtgattaattgtctctgtgtgtatttt 17170325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 645 - 726
Target Start/End: Original strand, 18223375 - 18223456
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||| | ||||||| |||||||    
T  18223375 ttttcgctagaattattttaattatttattatgtgtgtttatatgtgcttgtatgcgattaattatatttgtgtatattttg 18223456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 642 - 730
Target Start/End: Original strand, 19315702 - 19315790
Alignment:
Q  642 cgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |||||| ||||| |||||| ||||    
T  19315702 cgtttttcaatataattattttaattattcattatgtgtgtttatatgtgcttgtatgtgattatttgtctctgtgtctattttattcg 19315790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 645 - 725
Target Start/End: Complemental strand, 24516844 - 24516764
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||| |||| |||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||    
T  24516844 tttttgctaaaattattttaattaattattatgtgcgtttatatgtgcttgtatgtgattaattgtctctgtgtgtatttt 24516764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 645 - 725
Target Start/End: Original strand, 22826936 - 22827016
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||| |||| |||||||||||||| ||||||||||||| ||||| | ||| |||||||||| | |||| ||||||||||||    
T  22826936 tttttgctagaattattttaattaattattatgtgtgtctatatgttcttgtatgtgattattcgtctctgtgtgtatttt 22827016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 642 - 724
Target Start/End: Original strand, 19858749 - 19858831
Alignment:
Q  642 cgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattt 724  Q
    ||||||||| || ||||||| ||||||||||||||||||| ||||||   ||| | |||||||| |||||| |||||||||||    
T  19858749 cgtttttcgttagaattattctaattatttattatgtgtggttatatgctcttgtgtgtgattatttgtctctgtgtgtattt 19858831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 638 - 724
Target Start/End: Complemental strand, 22446869 - 22446783
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattt 724  Q
    |||||| ||||||||| |||||||||| ||| ||||||||||||||||||| ||  | |||||||||  |||||| |||| ||||||    
T  22446869 agcccgattttcgctagaattattttatttaattattatgtgtgtttatatgtgtgtgtatgtgattgtttgtctatgtgcgtattt 22446783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 643 - 705
Target Start/End: Original strand, 10176021 - 10176081
Alignment:
Q  643 gtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgatta 705  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||| || || ||||||||||    
T  10176021 gtttttcgctagaattattttaattatttatta--tgtgtttatatgtgtttgtatgtgatta 10176081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 639 - 710
Target Start/End: Complemental strand, 31480377 - 31480307
Alignment:
Q  639 gcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgt 710  Q
    ||||| ||||||||| |||||||||||||||  ||||||||||||||||| ||||| ||| |||||| ||||    
T  31480377 gcccgattttcgctagaattattttaattatc-attatgtgtgtttatatgtgcttgtatatgattatttgt 31480307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 645 - 725
Target Start/End: Original strand, 26260408 - 26260488
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||| | ||||||| |||| ||||||||||||| | ||||||||| | |||||||| ||  || ||||||||||||    
T  26260408 ttttcgctagatttatttttattaattattatgtgtgtatttatatgcttgtgtgtgattatttacctctgtgtgtatttt 26260488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 726
Target Start/End: Original strand, 20726329 - 20726413
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    ||||||||||  || ||||||||||||||| | |||||| ||||  ||| ||||| |||||||||| || ||||||||| |||||||    
T  20726329 cccgtttttcaatagaattattttaattatattttatgtatgtt--tatgtgcttgtatgtgattatttctctttgtgtttattttg 20726413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 686
Target Start/End: Complemental strand, 17364893 - 17364851
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttat 686  Q
    ||||| |||| |||||||||||||||||||||| |||||||||    
T  17364893 tttttagctagaattattttaattatttattatatgtgtttat 17364851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 711
Target Start/End: Original strand, 22053212 - 22053278
Alignment:
Q  644 tttttcgctataattattttaatta-tttattatgtgtgtttatatatgcttctatgtgattaattgtc 711  Q
    |||||||||||| |||||||||||  ||||||| ||||  |||||| |||| |||||||||||||||||    
T  22053212 tttttcgctatatttattttaattgctttattacgtgt--ttatatgtgctcctatgtgattaattgtc 22053278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 25243028 - 25243109
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtg 719  Q
    |||| |||||| |||| ||||||||||| |||||||||| ||||||||| | || ||  ||||| ||| || ||||||||||    
T  25243028 agcctgtttttagctagaattattttaactatttattatatgtgtttatgtgtgtttacatgtgcttatttttctttgtgtg 25243109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 25307180 - 25307261
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtg 719  Q
    |||| |||||| |||| ||||||||||| |||||||||| ||||||||| | || ||  ||||| ||| || ||||||||||    
T  25307180 agcctgtttttagctagaattattttaactatttattatatgtgtttatgtgtgtttacatgtgcttatttttctttgtgtg 25307261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 640 - 730
Target Start/End: Complemental strand, 16896879 - 16896789
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||| | || |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||| ||||    
T  16896879 cccgttttttgttagaattattttaattatttattatgtgtgtttatatgtgcttgtatgtgatgaattgtctctgtgtgtattttattcg 16896789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 645 - 730
Target Start/End: Complemental strand, 14355860 - 14355775
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| || |||||||||||| ||||    
T  14355860 ttttcgctaaaattattttaattatttattatgtgtgtttatatgtgcttgtgtgtgattgattgcctctgtgtgtattttattcg 14355775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 637 - 725
Target Start/End: Complemental strand, 13310739 - 13310652
Alignment:
Q  637 tagcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||| ||||||||| | |||||||| ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||    
T  13310739 tagcccgattttcgctagatttatttta-ttatttattatgtgtatttatgtgtgcttctatgtaattaattgtctttgtgtgtatttt 13310652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 644 - 725
Target Start/End: Original strand, 14565892 - 14565973
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||| || | |||||||||||||||||||||||||||||||| |  || | ||||||||||||||||||||||||||||    
T  14565892 tttttcgttagatttattttaattatttattatgtgtgtttatatgtttttatgtgtgattaattgtctttgtgtgtatttt 14565973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 640 - 725
Target Start/End: Original strand, 18027827 - 18027912
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||| | || |||||||||||||||||||||||||||||||||| ||||| | |||||||| || ||| ||||||||||||    
T  18027827 cccgttttttgatagaattattttaattatttattatgtgtgtttatatgtgcttgtgtgtgattatttatctctgtgtgtatttt 18027912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 638 - 712
Target Start/End: Original strand, 13562477 - 13562551
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtct 712  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||||||||  |||| | |||||||||||||||    
T  13562477 agcccgtttttcgctaaaattattttaaatatttattatatgtgtttatattcgcttgtgtgtgattaattgtct 13562551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 645 - 725
Target Start/End: Complemental strand, 18558223 - 18558143
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||| || |||||||||||||| ||||||||| ||||||||| ||||| |||||| ||| |||||| ||||||||||||    
T  18558223 ttttcgttagaattattttaattaattattatgtatgtttatatgtgcttgtatgtgtttatttgtctatgtgtgtatttt 18558143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 638 - 721
Target Start/End: Original strand, 19969028 - 19969109
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgta 721  Q
    |||| ||||||||||||||||||||||||||||||  |||||||||| ||| ||||| || ||||||||||| |||||| ||||    
T  19969028 agcctgtttttcgctataattattttaattattta--atgtgtgtttttatgtgcttgtaagtgattaattgcctttgtatgta 19969109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 643 - 722
Target Start/End: Original strand, 19976592 - 19976671
Alignment:
Q  643 gtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtat 722  Q
    ||||||| ||| |||||||||| ||||||||||| ||||||||||| ||||| | |||||||| ||| ||||||||||||    
T  19976592 gtttttctctagaattattttagttatttattatatgtgtttatatgtgcttttgtgtgattatttgcctttgtgtgtat 19976671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 658 - 725
Target Start/End: Complemental strand, 14894608 - 14894541
Alignment:
Q  658 tattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||   ||||||||||    
T  14894608 tattttaattatttattatgtgtgtttatatgtgcttgtatatgattatttgtctcaatgtgtatttt 14894541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 660 - 726
Target Start/End: Original strand, 4176997 - 4177062
Alignment:
Q  660 ttttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||||||| ||| |||||||||||||||||||||  |||||||||| ||||||||||||| ||||||    
T  4176997 ttttaattgttt-ttatgtgtgtttatatatgctcatatgtgattatttgtctttgtgtgcattttg 4177062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 640 - 726
Target Start/End: Complemental strand, 14672334 - 14672248
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||| |||||| || | |||||||||||| || |||| ||| ||||||| ||||| |||||||||||||| || |||||||||||||    
T  14672334 cccgattttcgttagatttattttaattaatttttatatgtatttatatgtgcttgtatgtgattaattgcctctgtgtgtattttg 14672248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 657 - 726
Target Start/End: Original strand, 15514654 - 15514721
Alignment:
Q  657 ttattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||||||||||| || |||||||  ||||||||||||| |||||||||||||| || |||||||||||||    
T  15514654 ttattttaattaatttttatgtg--tttatatatgcttgtatgtgattaattgcctctgtgtgtattttg 15514721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 655 - 694
Target Start/End: Complemental strand, 10975722 - 10975683
Alignment:
Q  655 aattattttaattatttattatgtgtgtttatatatgctt 694  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  10975722 aattattttaattaattattatgtgtgtttatatatgctt 10975683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 648 - 730
Target Start/End: Original strand, 5484119 - 5484201
Alignment:
Q  648 tcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||| ||||||| |||||||||||||||  ||||||| | || || |||||||||| |||||| ||||||| |||| ||||    
T  5484119 tcgctagaattattctaattatttattatgcatgtttatgtgtgtttgtatgtgattagttgtctctgtgtgtgttttattcg 5484201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 730
Target Start/End: Complemental strand, 19981006 - 19980945
Alignment:
Q  669 tttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||||||| ||||||||| | ||||||||||||  | |||||||||||| ||||    
T  19981006 tttattatgtgtgtttgtatatgcttatgtgtgattaattgcatatgtgtgtattttattcg 19980945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 646 - 705
Target Start/End: Complemental strand, 9296693 - 9296635
Alignment:
Q  646 tttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgatta 705  Q
    |||||||| | |||||||| ||||||||||||||| ||||||| ||||| ||||||||||    
T  9296693 tttcgctagatttatttta-ttatttattatgtgtatttatatgtgcttgtatgtgatta 9296635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 725
Target Start/End: Complemental strand, 9521792 - 9521712
Alignment:
Q  643 gtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||| |||||||||| | |||||| ||||||  ||||||  | || |||||||||| ||||| |||||||||||||    
T  9521792 gtttttcgctagaattattttattaatttatcatgtgt--ttatatgagtttgtatgtgattatttgtcattgtgtgtatttt 9521712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 725
Target Start/End: Original strand, 17013080 - 17013127
Alignment:
Q  678 tgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||| ||||| |||||||||||||| || ||||||||||||    
T  17013080 tgtgtttatatgtgcttttatgtgattaattgcctctgtgtgtatttt 17013127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 725
Target Start/End: Complemental strand, 23301378 - 23301291
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||||||||| |||||||||| ||||||||||| | | |||  || || || | |||| ||| |||| ||||||||||||||    
T  23301378 agcccgtttttcgctagaattattttatttatttattatatttttttgaatgtgtttatgtgtgcttacttgtgtttgtgtgtatttt 23301291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 659 - 725
Target Start/End: Complemental strand, 18733784 - 18733719
Alignment:
Q  659 attttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||| ||| |||||||||||||  ||||||  ||||||||||||||||| ||| ||||||||    
T  18733784 attttaattgttt-ttatgtgtgtttaattatgctcgtatgtgattaattgtctatgtctgtatttt 18733719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 726
Target Start/End: Original strand, 31466954 - 31467019
Alignment:
Q  660 ttttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||||||| |||| ||||||| ||| ||||||||| ||||||||||||||  | |||||||||||||    
T  31466954 ttttaattgtttaatatgtgttttt-tatatgcttttatgtgattaattgcttctgtgtgtattttg 31467019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 640 - 725
Target Start/End: Complemental strand, 25377 - 25292
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||| ||||| ||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||    
T  25377 cccgattttcactagaattattttaattatttattatgtgtttttatatgtgcttgtatgtgattaattgtctgtgtgtgtatttt 25292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 686
Target Start/End: Original strand, 29225 - 29273
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttat 686  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  29225 agcctgttttttgctataattattttaattatttattatatgtgtttat 29273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 644 - 725
Target Start/End: Complemental strand, 61930 - 61849
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||| |||||||||||||||||||||||||||| ||||| || || ||||||||||||||||| ||||||||||||    
T  61930 tttttcgctagaattattttaattatttattatgtgtgtctatatttgtttatatgtgattaattgtctctgtgtgtatttt 61849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 638 - 730
Target Start/End: Complemental strand, 8705 - 8613
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| | |||| |||||||||||| ||||    
T  8705 agcctgttttttgctagaattattttaattatttattatgtgtgtttatatgtgcttgtatgtgattactcgtctctgtgtgtattttattcg 8613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 638 - 730
Target Start/End: Original strand, 11773285 - 11773377
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| | ||||| || |||||| |||||||||||| ||||    
T  11773285 agcccgtttttcgttaaaattattttaattatttattatgtgtgtttatatgtgcttgtgtgtgactatttgtctctgtgtgtattttattcg 11773377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 640 - 730
Target Start/End: Original strand, 13761022 - 13761112
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||| | ||| |||||||||| |||||| |||||||||||| ||||    
T  13761022 cccgtttttcgctggaattattttaattatttattatgtgtatttatatgtacttgtatgtgattatttgtctatgtgtgtattttattcg 13761112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 641 - 730
Target Start/End: Original strand, 3169557 - 3169646
Alignment:
Q  641 ccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |  ||  ||||||| | || |||||||||||||||| ||||    
T  3169557 ccgtttttcgctagaattattttaaatatttattatgtgtgtttatatgttgttgcatgtgatcatttatctttgtgtgtattttcttcg 3169646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 637 - 725
Target Start/End: Complemental strand, 18083354 - 18083266
Alignment:
Q  637 tagcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||||| | | |||||||||||||||||||||| ||||||||||| ||||| |||||||||| || ||   |||||||||||    
T  18083354 tagcccgtttttcccgagaattattttaattatttattatatgtgtttatatgtgcttgtatgtgattatttttcccagtgtgtatttt 18083266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 641 - 731
Target Start/End: Original strand, 29740550 - 29740639
Alignment:
Q  641 ccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcga 731  Q
    |||||||||| || ||||||||||||| | ||||||||||| |||||| || || |||||||||| |||||| |||||||||||| |||||    
T  29740550 ccgtttttcgttagaattattttaattgtctattatgtgtgcttatatgtg-ttttatgtgattatttgtctatgtgtgtattttattcga 29740639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 640 - 724
Target Start/End: Complemental strand, 16095664 - 16095580
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattt 724  Q
    ||||||||| |||| ||||||||||||||||  |||||||||||||||| || || | |||  ||| ||||||||||||||||||    
T  16095664 cccgtttttagctagaattattttaattattatttatgtgtgtttatatgtgtttgtttgtacttagttgtctttgtgtgtattt 16095580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 640 - 726
Target Start/End: Original strand, 18363089 - 18363175
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||| |||| |||||| |||||||| || |||||||| | ||||||||| ||||| |||||||||| ||| || |||||||||||||    
T  18363089 cccgatttttgctatatttattttatttttttattatatatgtttatatgtgcttgtatgtgattatttgcctatgtgtgtattttg 18363175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 637 - 725
Target Start/End: Complemental strand, 17923370 - 17923282
Alignment:
Q  637 tagcccgtttttcgctataatta-ttttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||| ||||||||| | ||| |||||||| ||| | |||||||||||| ||||||  ||||||||||||||||| ||||||||||||    
T  17923370 tagcccgattttcgctagatttaattttaattgttt-taatgtgtgtttatttatgctcgtatgtgattaattgtctatgtgtgtatttt 17923282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 637 - 726
Target Start/End: Complemental strand, 19070750 - 19070662
Alignment:
Q  637 tagcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    ||||||| |||||| || | ||||||||||| ||| |||||||||||||| ||||||  |||||||||  |||||| |||||||||||||    
T  19070750 tagcccgattttcgttagatttattttaattgttt-ttatgtgtgtttatttatgctcgtatgtgattgtttgtctatgtgtgtattttg 19070662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 688
Target Start/End: Complemental strand, 16197767 - 16197719
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatat 688  Q
    ||||||||||| || |||||||||||||||||||||| |||||||||||    
T  16197767 cccgtttttcgttagaattattttaattatttattatatgtgtttatat 16197719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 640 - 726
Target Start/End: Complemental strand, 5630 - 5545
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||| ||| ||||| | |||||||| ||||||||||||||||||||| || ||||  ||||||||| ||| || |||||||||||||    
T  5630 cccgatttacgctagatttatttta-ttatttattatgtgtgtttatttaagcttgcatgtgattatttgcctctgtgtgtattttg 5545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 726
Target Start/End: Complemental strand, 4485573 - 4485520
Alignment:
Q  673 ttatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||| ||||||| ||||||||| |||||||||||||| || |||||||||||||    
T  4485573 ttatatgtgtttttatatgcttttatgtgattaattgcctctgtgtgtattttg 4485520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 640 - 684
Target Start/End: Original strand, 8326472 - 8326516
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgttt 684  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||    
T  8326472 cccgtttttcgctagaattattttcattatttattatgagtgttt 8326516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 686
Target Start/End: Complemental strand, 13146717 - 13146672
Alignment:
Q  641 ccgtttttcgctataattattttaattatttattatgtgtgtttat 686  Q
    |||||||| | || |||||||||||||||||||||| |||||||||    
T  13146717 ccgttttttgatagaattattttaattatttattatatgtgtttat 13146672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 637 - 730
Target Start/End: Complemental strand, 3008 - 2915
Alignment:
Q  637 tagcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||||||| ||| ||||| |||||||||||||| ||| ||||||||| ||||| ||| |||||| ||||||||||||||||||| ||||    
T  3008 tagcccgtttttcactagaattaatttaattatttattttgtatgtttatatgtgcttgtatctgattatttgtctttgtgtgtattttattcg 2915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 725
Target Start/End: Complemental strand, 78076 - 77993
Alignment:
Q  642 cgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||  ||||| |||||||||| |||||| ||||||||||||    
T  78076 cgtttttcgctagaattcttttaattatttattatgtgtatttataggtgcttgtatgtgattatttgtctgtgtgtgtatttt 77993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 644 - 731
Target Start/End: Complemental strand, 20511148 - 20511061
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcga 731  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| || || |||||||||||||||||  ||| ||||||| |||||    
T  20511148 tttttcgctagaattattttaattatttattatgtatgtttatatgtgtttgtatgtgattaattgtctcggtgcgtattttattcga 20511061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 640 - 730
Target Start/End: Complemental strand, 18996079 - 18995989
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||| ||||||| ||| |||||||||||| ||||||||||||||||| | ||||| ||| |||||| |||||| ||||||| |||| ||||    
T  18996079 cccgattttcgcaatagttattttaattaattattatgtgtgtttatttgtgcttgtatatgattatttgtctctgtgtgttttttattcg 18995989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 640 - 730
Target Start/End: Complemental strand, 24282453 - 24282364
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||| ||| |||||||||||||||||||||| |||| |||||| ||||| ||| ||||||||||||| | ||| |||||| ||||    
T  24282453 cccgtttttcactaaaattattttaattatttattatttgtg-ttatatgtgcttgtatatgattaattgtctctttgtatattttattcg 24282364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 640 - 725
Target Start/End: Complemental strand, 28775072 - 28774988
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||||||| ||| ||||||||||||||||| ||||| |||||| || || ||| |||||| |||||| ||||||||||||    
T  28775072 cccgtttttcgctagaat-attttaattatttattacgtgtgattatatgtgtttgtatatgattatttgtctgtgtgtgtatttt 28774988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 655 - 725
Target Start/End: Complemental strand, 19285397 - 19285328
Alignment:
Q  655 aattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||||||||||||||||||| ||||||  | || | ||||||||||||||| ||||||||||||    
T  19285397 aattattttaattatttattatgtgtg-ttatatgcgtttgtgtgtgattaattgtctctgtgtgtatttt 19285328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 672 - 725
Target Start/End: Original strand, 19901698 - 19901751
Alignment:
Q  672 attatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||    
T  19901698 attatgtgtgtttatatgttcttgtatgtgattaattttctttgtgtgtatttt 19901751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 644 - 725
Target Start/End: Original strand, 24699272 - 24699353
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||| || |||||||||||||||||||||| ||||||||||| |  || | |||| ||||||| |||||||| ||||||    
T  24699272 tttttcgatagaattattttaattatttattatatgtgtttatatgtatttatgtgtgcttaattgcctttgtgtatatttt 24699353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 725
Target Start/End: Complemental strand, 21655047 - 21654960
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||| |||||| |||| |||||| |||||||||||||||||||| ||||||  |||| | ||||| || |||| | ||||||||||||    
T  21655047 agcctgttttttgctaaaattatcttaattatttattatgtgtgattatatgcgcttgtgtgtgactatttgtatctgtgtgtatttt 21654960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 725
Target Start/End: Original strand, 24689915 - 24690002
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||| ||||||| || |||||||||||||||||||||| ||||| ||||| |  || | |||| ||||||| |||||||| ||||||    
T  24689915 agcccatttttcgatagaattattttaattatttattatatgtgtatatatgtatttatgtgtgcttaattgcctttgtgtatatttt 24690002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 730
Target Start/End: Complemental strand, 27354340 - 27354277
Alignment:
Q  667 tatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||||||||| ||||||||||| ||||| | || |||||||||||| ||||| |||||| ||||    
T  27354340 tatttattatatgtgtttatatgtgcttgtgtgagattaattgtctctgtgtatattttattcg 27354277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 730
Target Start/End: Original strand, 34133550 - 34133642
Alignment:
Q  637 tagcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtg-attaattgtctttgtgtgtattttgttcg 730  Q
    ||||||| |||||| || ||||||||||||||||| ||||| ||| |||||| ||  | |||||| ||||||||||| | |||||||||| ||||    
T  34133550 tagcccgattttcgttagaattattttaattatttgttatgcgtgcttatatgtg--tttatgtgcattaattgtctatttgtgtattttattcg 34133642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 638 - 724
Target Start/End: Original strand, 21909410 - 21909496
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattt 724  Q
    ||||| ||||| | || |||||||||||||||||||||| ||||||||||| ||  | | ||| |||| |||| | |||||||||||    
T  21909410 agcccatttttagatagaattattttaattatttattatatgtgtttatatgtgtctatgtgtcattatttgtttatgtgtgtattt 21909496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 640 - 730
Target Start/End: Complemental strand, 16572000 - 16571910
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||| | ||  ||||||||||||||||| ||| |||||||| ||||    
T  16572000 cccgtttttcgctatgattaatttaattatttattatgtgtatttatatgtcctcgtatgtgattaattgtctatgtatgtattttattcg 16571910  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 645 - 730
Target Start/End: Complemental strand, 28801630 - 28801546
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    ||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||| ||| || |||||| |||||||||||||||||    
T  28801630 ttttcgctagaattattttaattaattattatgtgtgtttatatgtgcttgtatatga-tatttgtctctgtgtgtattttgttcg 28801546  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 642 - 725
Target Start/End: Complemental strand, 21982793 - 21982710
Alignment:
Q  642 cgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||| || |||||||||| |||||||||||||||| |||||| ||||| ||| |||||| || ||||||||||||||||    
T  21982793 cgtttttcgttagaattattttatttatttattatgtgtgcttatatgtgcttgtatatgattatttatctttgtgtgtatttt 21982710  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 643 - 724
Target Start/End: Complemental strand, 9273466 - 9273385
Alignment:
Q  643 gtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattt 724  Q
    |||||| |||| ||||| ||||||| |||||||||| ||||| |||||| || | | ||||||||||||| |||||||||||    
T  9273466 gtttttagctagaattaatttaattgtttattatgtttgtttctatatgtttatgtttgattaattgtctctgtgtgtattt 9273385  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 725
Target Start/End: Complemental strand, 15712258 - 15712171
Alignment:
Q  640 cccgtttttcgctataattattttaattatttatta--tgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||| || |||||||||| |||||||||   | ||||||||||  ||||| | |||||||||||| |||||||||||||||    
T  15712258 cccgtttttcgttagaattattttatttatttatttattatgtgtttataagtgcttgtgtgtgattaattgcctttgtgtgtatttt 15712171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 644 - 726
Target Start/End: Complemental strand, 9652827 - 9652747
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    ||||||| || | |||||||||||| || ||||||||  |||||| ||||| ||||||| ||||||||| |||||||||||||    
T  9652827 tttttcgttagatttattttaattaatttttatgtgt--ttatatgtgcttttatgtgactaattgtctctgtgtgtattttg 9652747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 686
Target Start/End: Complemental strand, 11777046 - 11777004
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttat 686  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  11777046 tttttcgctagaattattttaactatttattatgtgtgtttat 11777004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 643 - 724
Target Start/End: Complemental strand, 9253495 - 9253414
Alignment:
Q  643 gtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattt 724  Q
    |||||| |||| ||||| || ||| ||||||||||| |||||||||||| || | | ||||||||||||| ||||| |||||    
T  9253495 gtttttagctagaattaattaaatgatttattatgtttgtttatatatgtttatgtatgattaattgtctctgtgtctattt 9253414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 637 - 694
Target Start/End: Complemental strand, 16684957 - 16684900
Alignment:
Q  637 tagcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgctt 694  Q
    ||||||||||||||||| |||||||||| |||||| || | ||||||||||| |||||    
T  16684957 tagcccgtttttcgctagaattattttatttatttgttttatgtgtttatatgtgctt 16684900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 662 - 731
Target Start/End: Original strand, 6942864 - 6942935
Alignment:
Q  662 ttaattatttattatgtgtgtttatatatgct--tctatgtgattaattgtctttgtgtgtattttgttcga 731  Q
    ||||||||||||||||||||||||||| ||||  | | |||||||| |||||| ||| |||||||| |||||    
T  6942864 ttaattatttattatgtgtgtttatatgtgcttgtgtgtgtgattatttgtctctgtatgtattttattcga 6942935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 665 - 725
Target Start/End: Original strand, 12333994 - 12334054
Alignment:
Q  665 attatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||| ||||||||||||||||||| ||  | | ||||||||||||||| ||||||||||||    
T  12333994 attaattattatgtgtgtttatatgtgtctgtttgtgattaattgtctatgtgtgtatttt 12334054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 712
Target Start/End: Complemental strand, 9567397 - 9567330
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtct 712  Q
    ||||| ||| |||||||||||||| |||||||||||| |||||| ||  | |||||||||| ||||||    
T  9567397 ttttcactagaattattttaattaattattatgtgtggttatatgtgtctgtatgtgattatttgtct 9567330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 643 - 725
Target Start/End: Complemental strand, 19890418 - 19890336
Alignment:
Q  643 gtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||| ||||||||| ||||||||||||  ||||||||   || || |||||| ||| || || |||||||||||||    
T  19890418 gtttttcgctagaattatttttattatttattataggtgtttatgcgtgtttgtatgtgcttatttatccttgtgtgtatttt 19890336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 703
Target Start/End: Original strand, 23269250 - 23269315
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgat 703  Q
    |||||| ||||||||||| |||||||||||| || |  ||||||||||||| ||||| | ||||||    
T  23269250 agcccgattttcgctatatttattttaattacttttattgtgtgtttatatgtgcttgtgtgtgat 23269315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 642 - 725
Target Start/End: Original strand, 202204 - 202286
Alignment:
Q  642 cgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||| || |||||||||||||||||||||||||| ||||||| ||||| ||||||| || |||||| ||||||||||||    
T  202204 cgtttttcgatagaattattttaattatttattatgtgtatttatatgtgcttgtatgtga-tatttgtctctgtgtgtatttt 202286  T

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Target: scaffold0007 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 638 - 705
Target Start/End: Original strand, 204092 - 204159
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgatta 705  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||| || | ||||||||    
T  204092 agcccgtttttcgttagaattattttaattatttattatgtgtgtttatatatgtttgtgtgtgatta 204159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 641 - 725
Target Start/End: Original strand, 17701 - 17784
Alignment:
Q  641 ccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||||   ||| | |||||||| |||||||||||||||||||    
T  17701 ccgtttttcgctagaattattttaattatttattatatgtg-ttatatgcacttgtgtgtgattatttgtctttgtgtgtatttt 17784  T

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Target: scaffold0193 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 645 - 724
Target Start/End: Complemental strand, 19737 - 19658
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattt 724  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||| ||||| || |||| ||||||||  |||||||||||    
T  19737 ttttccctagaattattttaattaattattatgtgtgtttatatctgcttgtaagtgaataattgtcactgtgtgtattt 19658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 646 - 725
Target Start/End: Complemental strand, 19897 - 19818
Alignment:
Q  646 tttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||| || |||||||||||||||||||||| ||||||||||| || || | ||||||||||||||  ||||||||||||    
T  19897 tttcgttagaattattttaattatttattatatgtgtttatatgtgtttatgtgtgattaattgtccatgtgtgtatttt 19818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 638 - 725
Target Start/End: Original strand, 370687 - 370774
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||| |||||||||| ||||||||||||| |||||||| ||||||||||  || || | ||||||||||||||  ||||||||||||    
T  370687 agcccatttttcgctagaattattttaattgtttattatatgtgtttatacgtgtttatgtgtgattaattgtccctgtgtgtatttt 370774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 726
Target Start/End: Complemental strand, 14031 - 13962
Alignment:
Q  657 ttattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||||||||||  ||||||| | ||||||||| |||||||||||||||||||| || |||||||||||||    
T  14031 ttattttaattcattattatatatgtttatatgtgcttctatgtgattaattgcctctgtgtgtattttg 13962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0772 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 644 - 725
Target Start/End: Original strand, 2111 - 2191
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||| || | ||||||| ||||||| |||| | ||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  2111 tttttcgttacatttatttttattattt-ttatatatgtttatatgtgcttatatgtgattaattgtctctgtgtgtatttt 2191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 694
Target Start/End: Original strand, 42367 - 42423
Alignment:
Q  638 agcccgtttttcgctataattattttaattatttattatgtgtgtttatatatgctt 694  Q
    |||||||||||||||| |||||||||||||||||||||| |||| || ||| |||||    
T  42367 agcccgtttttcgctagaattattttaattatttattatatgtggttgtatgtgctt 42423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 641 - 731
Target Start/End: Complemental strand, 73628 - 73540
Alignment:
Q  641 ccgtttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcga 731  Q
    ||||||||||||| ||||||||||  ||||||||  |||||||||||| ||||| | ||| |||| |||| | |||||||||||| |||||    
T  73628 ccgtttttcgctagaattattttatatatttatt--gtgtgtttatatgtgcttgtgtgtcattatttgtttctgtgtgtattttattcga 73540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 645 - 707
Target Start/End: Complemental strand, 8817 - 8755
Alignment:
Q  645 ttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaat 707  Q
    ||||||||| | ||||||| |||  ||||||||||||||||| ||||||| ||||||||||||    
T  8817 ttttcgctagatttatttttatttgttattatgtgtgtttatttatgcttgtatgtgattaat 8755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 660 - 726
Target Start/End: Complemental strand, 11886 - 11821
Alignment:
Q  660 ttttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||||||||||| | || ||||||||||| |||||  ||||||||||||| ||||||||||||||||    
T  11886 ttttaattattt-taatatgtgtttatatctgcttaaatgtgattaattgcctttgtgtgtattttg 11821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 730
Target Start/End: Complemental strand, 20164 - 20109
Alignment:
Q  675 atgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttgttcg 730  Q
    |||| ||||||||| ||||| |||||||||| ||||||||||| ||||||| ||||    
T  20164 atgtatgtttatatgtgcttgtatgtgattatttgtctttgtgcgtattttattcg 20109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 637 - 726
Target Start/End: Original strand, 6439 - 6528
Alignment:
Q  637 tagcccgtttttcgctataattatttt-aattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    ||||||| ||||||||| | ||||||| |||| ||| |||||||||||| | ||||||  |||||||||||||| || |||||||||||||    
T  6439 tagcccgattttcgctagatttatttttaattgttt-ttatgtgtgtttgtttatgctcgtatgtgattaattgcctatgtgtgtattttg 6528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 726
Target Start/End: Original strand, 5200 - 5253
Alignment:
Q  673 ttatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtattttg 726  Q
    |||||||||||||||| ||||| | |||||||||||| || |||||||||||||    
T  5200 ttatgtgtgtttatatgtgcttgtttgtgattaattgcctctgtgtgtattttg 5253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 725
Target Start/End: Complemental strand, 10348 - 10299
Alignment:
Q  676 tgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||||| ||||| | ||||||||||||||| ||||||||||||    
T  10348 tgtgtgtttatatgtgcttgtctgtgattaattgtctatgtgtgtatttt 10299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 640 - 688
Target Start/End: Original strand, 151223 - 151271
Alignment:
Q  640 cccgtttttcgctataattattttaattatttattatgtgtgtttatat 688  Q
    ||||||||| ||||||||||||||||||| || |||||| |||||||||    
T  151223 cccgttttttgctataattattttaattaatttttatgtatgtttatat 151271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 644 - 686
Target Start/End: Complemental strand, 155658 - 155616
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttat 686  Q
    |||||||||| ||||||||||||||||||||||  ||||||||    
T  155658 tttttcgctagaattattttaattatttattatacgtgtttat 155616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 725
Target Start/End: Complemental strand, 26152 - 26105
Alignment:
Q  678 tgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    ||||||||||| ||||| |||||||||||||| || ||||||||||||    
T  26152 tgtgtttatatgtgcttttatgtgattaattgcctctgtgtgtatttt 26105  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 646 - 688
Target Start/End: Complemental strand, 109148 - 109106
Alignment:
Q  646 tttcgctataattattttaattatttattatgtgtgtttatat 688  Q
    |||||||| |||||||||||||| ||||||| |||||||||||    
T  109148 tttcgctagaattattttaattaattattatatgtgtttatat 109106  T

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Target: scaffold0233 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 644 - 725
Target Start/End: Complemental strand, 16493 - 16412
Alignment:
Q  644 tttttcgctataattattttaattatttattatgtgtgtttatatatgcttctatgtgattaattgtctttgtgtgtatttt 725  Q
    |||||||||| || |||||||  ||||||||||||||||||||||   ||| | ||| |||  |||||||||||||| ||||    
T  16493 tttttcgctagaactattttagatatttattatgtgtgtttatatgcacttgtgtgtcattgtttgtctttgtgtgtgtttt 16412  T

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