View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1649-Insertion-1 (Length: 514)
Name: NF1649-Insertion-1
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 156 - 510
Target Start/End: Complemental strand, 48600373 - 48600016
Alignment:
| Q |
156 |
attatcgttcatgatgttctaatggggtgacttcatttctgttcaattgattcatttcatatttacgcgctttcaatcannnnnnnnn---------atc |
246 |
Q |
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| T |
48600373 |
attatcgttcatgatgttctaatggggtgacttcatttctgttcaattgattcatttcatatttacgcgctttgaatctttttttttttttttttttatc |
48600274 |
T |
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| Q |
247 |
aaatgacgtttgatcatgatcatgattatgcaacaaggttttaaataaggattttgtgatttcagctgttatagatgccgctttgcatggaatattagtc |
346 |
Q |
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| T |
48600273 |
aaatgacgtttgatcatgat------tgtgtaacaaggttttaaataaggattttgtgatttcagctgttatagatgcagctttgcatggaatattagtc |
48600180 |
T |
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| Q |
347 |
gtcttggtgtgaattaatcacggtgttagctatctattgaacttatccaatagaagataagatagcatttcataagttatagcatagttaggtgataata |
446 |
Q |
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| T |
48600179 |
gtcttggtgtgaattaatcacggtgttagctatctattgaacttatccaatagaagataagatagcatttcataagttatagcatagttaggtgataata |
48600080 |
T |
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| Q |
447 |
ctattgcatatgataatccttttcttctcccttgttcatgcattcatactgcaatgccattttt |
510 |
Q |
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| T |
48600079 |
ctattgcatatgataatccttttcttctcccttgttcatgcattcatactgcaatgccattttt |
48600016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 48600521 - 48600427
Alignment:
| Q |
8 |
gtttttgacatggcccaatgctctcaagatcactcttctccttctccttgtttccgctattgttgtcgcttgctttactctcccaattgaaaagg |
102 |
Q |
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| T |
48600521 |
gtttttgacatggcccaatgctctcaagatcactcttctccttctccttgtttccgctattgttgtcgcttgctttactctcccaattgaaaagg |
48600427 |
T |
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