View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1649-Insertion-2 (Length: 380)
Name: NF1649-Insertion-2
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 34222721 - 34223092
Alignment:
| Q |
10 |
aatcatgcaattcacacattggaaaattcttagcatgcattcaatattttagcaaatttaaatcaatattttaggtgcgtgtatagtgttattacactta |
109 |
Q |
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| T |
34222721 |
aatcatgcaattcacacattggaaaattcttagcatgcattcaatattttagcaaatttaaatcaatattttaggtgcgtgtatagtgttattacaatta |
34222820 |
T |
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| Q |
110 |
gaatgatcgcgaattgaaattaaattaacgattaaaactaattagtaagcnnnnnnn-gagattatgaagattgaagacttacaatgtgaatggcgtccg |
208 |
Q |
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| T |
34222821 |
gaatgatcgcgaattgaaatcaaattaacgtttaaaactaattagtaagaaaaaaaaagagattatgaagattaaagacttacaatgtgaatggcgtccg |
34222920 |
T |
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| Q |
209 |
aagtgacaatttggactgagtggcgaacgagtgaactcatcaagaacagaaacaggactcggttgttgttgttcaccgttaaccactgaacatttcacct |
308 |
Q |
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| T |
34222921 |
aagtgacaatttggactgagtggcgaacgagtgaactcgtcaagtacagaaacaggactcggttgctgttgttcaccgttaaccaccgaacatttcacct |
34223020 |
T |
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| Q |
309 |
caccaaccgttcgtttaaccaccgccggcgaaggtgacgaaaccggttcaggagtcctcactgattcaatga |
380 |
Q |
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| T |
34223021 |
caccaaccgttcgtttaaccaccgccggcgaaggtgacgaaaccggttcaggagtcctcactgattcaatga |
34223092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 55782325 - 55782392
Alignment:
| Q |
313 |
aaccgttcgtttaaccaccgccggcgaaggtgacgaaaccggttcaggagtcctcactgattcaatga |
380 |
Q |
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| T |
55782325 |
aaccgttcgtttaactaccgccggcgaaggtgacgaaactggttcaggagtcctcactgattcaatga |
55782392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 55846505 - 55846572
Alignment:
| Q |
313 |
aaccgttcgtttaaccaccgccggcgaaggtgacgaaaccggttcaggagtcctcactgattcaatga |
380 |
Q |
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| T |
55846505 |
aaccgttcgtttaactaccgccggcgaaggtgacgaaactggttcaggagtcctcactgattcaatga |
55846572 |
T |
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