View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1649-Insertion-5 (Length: 457)
Name: NF1649-Insertion-5
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649-Insertion-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 6 - 457
Target Start/End: Complemental strand, 3468145 - 3467693
Alignment:
| Q |
6 |
cactttctcatcgtgtgagttatgtctgggtggtacaagaagatggtaccttgtatgggattgttacttttcaaagtatgttgagaattttcagagaaca |
105 |
Q |
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| T |
3468145 |
cactttctcatcgtgtgagttatgtctgggtggtacaagaagatggtaccttgtatgggattgttacttttcaaagtatgttgagaattttcagagaaca |
3468046 |
T |
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| Q |
106 |
cttgaaatcaatgtcctaacacacatgtgt-ttagtgtagcatagcactcactatgtcatcatcatcaactaaataacaattcttaggttgctatcacat |
204 |
Q |
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| T |
3468045 |
cttgaaatcaatgtcctaacacacacatgtgttagtgtagcatagcactcactatgtcatcatcatcaactaaataataattcttaggttgctatcacat |
3467946 |
T |
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| Q |
205 |
ctcgaggaatcacatgtgatgtatgtaggtaaaacggatattctgcctacataagcaagatttgttttttgttctcaaatgggtaaagaaaccaattttc |
304 |
Q |
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| T |
3467945 |
ctcaaggaatcgcatgtgatgtatgtaggtaaaacggatattctgcctacataagcaagatttgttttttgttctcaaatgggtaaagaaaccaattttc |
3467846 |
T |
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| Q |
305 |
ttttttctattcgattatgtgcagcatttgtgcacaatatctacctgctatcaagtaatgtgactttttgtttttattctttgagggagagggataatgt |
404 |
Q |
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| T |
3467845 |
ttttttctattcgattatgtgcagcatttgtgcacaatatctacctgctatctagtaatgtgactttttgtttttattctttgagggagagggataatgt |
3467746 |
T |
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| Q |
405 |
tgatgannnnnnngactggttcgaatgtgaaaaagttgaggtagattgcttta |
457 |
Q |
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| T |
3467745 |
tgatgatttttttgactggttcgaatgtgaaaaagttgaggtagattgcttta |
3467693 |
T |
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