View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1649-Insertion-7 (Length: 681)

Name: NF1649-Insertion-7
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1649-Insertion-7
NF1649-Insertion-7
[»] chr3 (3 HSPs)
chr3 (138-678)||(24747464-24747998)
chr3 (11-97)||(24748039-24748125)
chr3 (45-86)||(36597383-36597424)
[»] chr2 (8 HSPs)
chr2 (469-678)||(28179794-28180007)
chr2 (589-677)||(28172170-28172256)
chr2 (601-678)||(27985922-27985996)
chr2 (601-678)||(28072453-28072527)
chr2 (501-565)||(28172098-28172162)
chr2 (586-658)||(28153427-28153499)
chr2 (138-217)||(28148235-28148314)
chr2 (138-212)||(28179448-28179522)
[»] chr1 (1 HSPs)
chr1 (586-678)||(26414733-26414822)


Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 138 - 678
Target Start/End: Complemental strand, 24747998 - 24747464
Alignment:
Q  138 tcataattcacaactgcgtctgcaaagcttctatcattttctttttctaaattgctagaatcaagattgttaactatgaagcaccgaaagtgattgtata 237  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24747998 tcataattcacaactgcgtctgcaaagcttctatcgttttctttttctaaattgctagaatcaagattgttaactatgaagcaccgaaagtgattgtata 24747899  T
Q  238 taattacaagtgccatgtcaaatgctcgagaacaccttcaaaatcgtatatggttggttggtcaatgagttcattgcaattggtgacaaactctcaaaat 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24747898 taattacaagtgccatgtcaaatgctcgagaacaccttcaaaatcgtatatggttggttggtcaatgagttcattgcaattggtgacaaactctcaaaat 24747799  T
Q  338 taaaagcacttagtttgtctgctttatgttggattggagtacaaatgtatttactggttttcaaatatttgagttctaacacaacaggataaatttttta 437  Q
    ||||||||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24747798 taaaagcacttagtttgactgctttatg---gattggagtacaaatgtatttactggttttcaaatatttgagttctaacacaacaggataaatttttta 24747702  T
Q  438 ccaactaacacaacaggatatacttttaccaactaatacaacagaaaaaacatgatcccatgattcaaagacatgccaaatatgatgactaacaccattc 537  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24747701 ccaactaacgcaacaggatatacttttaccaactaacacaacagaaaaaacatgatcccatgattcaaagacatgccaaatatgatgactaacaccattc 24747602  T
Q  538 cggtttggaaaaaactgcaccaatattcttctaaagtgaagacatggtaagtagaaatcaaatactaaaactaaagctttaataagagatatcatcatat 637  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  24747601 cggtttggaaaaaactgcaccaatattcctctaaagtgaagacatggtaagtagaaatcaaatactaaaact-aagctttgataagagatatcatcatat 24747503  T
Q  638 gctatagcccataattcacaccattattttcaagtacattg 678  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  24747502 gctatagcccataattcaca-catta-tttcaagtacattg 24747464  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 24748125 - 24748039
Alignment:
Q  11 gaggcgtggggtgctctgtttggtggtcctttgatggagtgtcgttttgacggctccgttggtgtatcttgtactactatttctctc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24748125 gaggcgtggggtgctctgtttggtggtcctttgatggagtgtcgttttgacggctccgttggtgtatcttgtactactatttctctc 24748039  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 36597383 - 36597424
Alignment:
Q  45 tggagtgtcgttttgacggctccgttggtgtatcttgtacta 86  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  36597383 tggagcgtcgttttgactactccgttggtgtatcttgtacta 36597424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 469 - 678
Target Start/End: Original strand, 28179794 - 28180007
Alignment:
Q  469 actaatacaacagaaaaaacatgat----cccatgattcaaagacatgccaaatatgatgactaacaccattccggtttggaaaaaactgcaccaatatt 564  Q
    ||||| ||||||||||||||||| |    |||||  |||||||||||||| ||||||| |||||||||||||| |||||||||| |||| ||  ||||||    
T  28179794 actaacacaacagaaaaaacatggtataacccatagttcaaagacatgcctaatatgaggactaacaccattctggtttggaaagaactacatgaatatt 28179893  T
Q  565 cttctaaag-----tgaagacatggtaagtagaaatcaaatactaaaactaaagctttaataagagatatcatcatatgctatagcccataattcacacc 659  Q
    |  | | ||     |||| ||||  ||||| ||||||||||||||||||||| ||||  ||||||  || |||||||||| ||||||||||||||||| |    
T  28179894 c--caagagaattttgaaaacatactaagtcgaaatcaaatactaaaactaa-gcttcgataagaattaccatcatatgcaatagcccataattcaca-c 28179989  T
Q  660 attattttcaagtacattg 678  Q
    |||| ||||||||||||||    
T  28179990 atta-tttcaagtacattg 28180007  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 589 - 677
Target Start/End: Original strand, 28172170 - 28172256
Alignment:
Q  589 tagaaatcaaatactaaaactaaagctttaataagagatatcatcatatgctatagc-ccataattcacaccattattttcaagtacatt 677  Q
    ||||||||||||||||||||||  |||||||||||||||  |||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  28172170 tagaaatcaaatactaaaactat-gctttaataagagatgccatcatatgctatagctccataattcaca-catta-tttcaagtacatt 28172256  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 678
Target Start/End: Complemental strand, 27985996 - 27985922
Alignment:
Q  601 actaaaactaaagctttaataagagatatcatcatatgctatagcccataattcacaccattattttcaagtacattg 678  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||| | | ||||| ||||||||||||||    
T  27985996 actaaaactaa-gctttaataagagatatcatcatatgctttagcccataatttata-catta-tttcaagtacattg 27985922  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 678
Target Start/End: Complemental strand, 28072527 - 28072453
Alignment:
Q  601 actaaaactaaagctttaataagagatatcatcatatgctatagcccataattcacaccattattttcaagtacattg 678  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||| | | ||||| ||||||||||||||    
T  28072527 actaaaactaa-gctttaataagagatatcatcatatgctttagcccataatttata-catta-tttcaagtacattg 28072453  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 501 - 565
Target Start/End: Original strand, 28172098 - 28172162
Alignment:
Q  501 ttcaaagacatgccaaatatgatgactaacaccattccggtttggaaaaaactgcaccaatattc 565  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||||| |||| || ||||||||    
T  28172098 ttcaaagacatgcctaatatgaggactaacaccattctggtttggaaagaactacatcaatattc 28172162  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 586 - 658
Target Start/End: Original strand, 28153427 - 28153499
Alignment:
Q  586 aagtagaaatcaaatactaaaactaaagctttaataagaga-tatcatcatatgctatagcccataattcacac 658  Q
    |||||||||||||||||||||| ||| |||| ||||||| | || |||||||| ||||||||||||||||||||    
T  28153427 aagtagaaatcaaatactaaaattaa-gcttcaataagaaactaccatcatattctatagcccataattcacac 28153499  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 28148235 - 28148314
Alignment:
Q  138 tcataattcacaactgcgtctgcaaagcttctatcattttctttttctaaattgctagaatcaagattgttaactatgaa 217  Q
    |||||||||||||||| | |||||||||||   || |  ||||||||| |||| |||||||||||||| |||||| ||||    
T  28148235 tcataattcacaactgtggctgcaaagcttacgtcgtcgtctttttctgaatttctagaatcaagatttttaactctgaa 28148314  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 28179448 - 28179522
Alignment:
Q  138 tcataattcacaactgcgtctgcaaagcttctatcattttctttttctaaattgctagaatcaagattgttaact 212  Q
    |||||||||||||| | |  |||||||||| || | | || |||||||||||| ||||||| |||||||||||||    
T  28179448 tcataattcacaaccgtggatgcaaagcttataacgtcttatttttctaaatttctagaataaagattgttaact 28179522  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 586 - 678
Target Start/End: Original strand, 26414733 - 26414822
Alignment:
Q  586 aagtagaaatcaaatactaaaactaaagctttaataagagatatcatcatatgctatagcccataattcacaccattattttcaagtacattg 678  Q
    ||||| |||| ||||||||||||||| ||||||||||||| || ||| |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  26414733 aagtaaaaattaaatactaaaactaa-gctttaataagaggtaccataatatgctagagcccataattcaca-catta-tttcaagtacattg 26414822  T

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