View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1649-Insertion-8 (Length: 595)
Name: NF1649-Insertion-8
Description: NF1649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1649-Insertion-8 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 8 - 595
Target Start/End: Complemental strand, 27973242 - 27972651
Alignment:
| Q |
8 |
gaaactaattttcttttttattgaaaaattactagtctactttttgaacattcctcattttgttaaccattaaaatgtgtaatgtaggacttgatggggt |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27973242 |
gaaactgattttcttttttattgaaaaattactagtctactttttgaacattcctcattttgttaaccattaaaatgtgtaatgtaggacttgatggggt |
27973143 |
T |
|
| Q |
108 |
tgtgtctgttttctcgaataaaaagcgaaaactccttacaaccaaatcatgggattttattggctttccgcagaatgtgcaaagagaaaactatgaaagt |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27973142 |
ggtgtctgttttcccgaataaaaagcgaaaactccttacaaccaaatcatgggattttattggctttccgcagaatgtgcaaagagaaaactatgaaagt |
27973043 |
T |
|
| Q |
208 |
gatgttatcgttggtgtaattgattctggaatttggccagaatccgaaagtttcaacgataaaggtttcagtcctccaccatccaaatggaagggcacgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27973042 |
gatgttatcgttggtgtaattgattctggaatttggccagagtccgaaagtttcaacgataaaggtttcagtccaccaccatccaaatggaagggcacgt |
27972943 |
T |
|
| Q |
308 |
gccagacttctgatgttccctgcaataagtaatactattatatgactttatgacccaaatttcatgcagttgcataaaaatgtatttgcttaagtaaata |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27972942 |
gccagacttctgatgttccctgcaataagtaatactattatatgactttatgacccaaattacatgcagttgcataaaaatgtatttgcttcagtaaata |
27972843 |
T |
|
| Q |
408 |
aatgttagttcttggatgtaataccttgtattataacattatgaaaattgatttaaaataaaatttaaatttgtccatttgatcttcactatatgaccga |
507 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27972842 |
aatgttggttcttggatgtaataccttgtattataacattatgaaaattgatttaaaataaaatttaaatttgtccatttgatcttcactatatgaccga |
27972743 |
T |
|
| Q |
508 |
tatcaaatttgttggtaacgccaattgcaggaaatccacttccatgtaatttgcagt---aagatgcc-tattataaatatgacagagagat |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
27972742 |
tatcaaatttgttggtaacgccaattgcaggaaatccacttccatgtaatttgcagtaagaagatgccttattataaatatgacagagagat |
27972651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 34822533 - 34822628
Alignment:
| Q |
226 |
attgattctggaatttggccagaatccgaaagtttcaacgataaaggtttcagtcctccaccatccaaatggaagggcacgtgccagacttctgat |
321 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||| | ||||| |||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
34822533 |
attgattctggaatttggccggaatcagaaagtttcaacgataaagaatatagtccaccaccaagcaaatggaagggcatttgccaagcttctgat |
34822628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 38839141 - 38839091
Alignment:
| Q |
201 |
tgaaagtgatgttatcgttggtgtaattgattctggaatttggccagaatc |
251 |
Q |
| |
|
|||||||||| ||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
38839141 |
tgaaagtgatattatcattggagtgattgattctggaatttggccagaatc |
38839091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 12862080 - 12862041
Alignment:
| Q |
234 |
tggaatttggccagaatccgaaagtttcaacgataaaggt |
273 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
12862080 |
tggaatatggccagaatctgaaagtttcaacgataaaggt |
12862041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 17779829 - 17779792
Alignment:
| Q |
236 |
gaatttggccagaatccgaaagtttcaacgataaaggt |
273 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
17779829 |
gaatttggccagaatctgaaagtttcaatgataaaggt |
17779792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 19081130 - 19081093
Alignment:
| Q |
236 |
gaatttggccagaatccgaaagtttcaacgataaaggt |
273 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
19081130 |
gaatttggccagaatctgaaagtttcaatgataaaggt |
19081093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7605 times since January 2019
Visitors: 6030