View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16490_low_1 (Length: 561)
Name: NF16490_low_1
Description: NF16490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16490_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 546
Target Start/End: Complemental strand, 38611393 - 38610864
Alignment:
| Q |
17 |
gaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38611393 |
gaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttca |
38611294 |
T |
|
| Q |
117 |
tcctgtggtaataccttttttctacttttgcagttcatcacagtttctgcttgttatctattaatggttgttaaagctgaaaaaatgaaatgtagaaata |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
38611293 |
tcctgtggtaataccttttttttacttttgcagttcatcacagtttctgcttcttatctattattggttgttaaagctgaaaaaatgaaatgtagaaata |
38611194 |
T |
|
| Q |
217 |
taagaccagtcagcgtgatgtggcagaacttcttaacttgacttgcttaacatcacatttctttgctccttgcaagctacagtgaacattaaatgtgacg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38611193 |
taagaccagtcagcgtgatgtggcagaacttcttaacttgacatgcttaacatcacatttctttgctccttgcaagctacagtgaacattaaatgtgacg |
38611094 |
T |
|
| Q |
317 |
tggcagaacttaacttgctacaatttcctatcttttgaaccccttgtatgttctgctcaacttttctttcatttcatggatcttattggatttttaactg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
38611093 |
tggcagaacttaacttgctacaatttcctatcttttgaaccccttgtatgttctgctcaacttttctttcatctcatggatcttattggatttttaactg |
38610994 |
T |
|
| Q |
417 |
tcacacgtttcgatgctaaagaggcttaatcttctataacatgaataagttaagcatgttcaagagttctagctgagacaatttcataataaccatgcaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38610993 |
tcacacgtttcgatgctaaagaggcttaatcttctataacatgaataagttaagcatgttcaagagttctagctgagacaatttcataataaccatgcaa |
38610894 |
T |
|
| Q |
517 |
agtaatagtctgttatttagtctatgtttt |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
38610893 |
agtaatagtctgttatttagtctatgtttt |
38610864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 122 - 546
Target Start/End: Complemental strand, 38796075 - 38795649
Alignment:
| Q |
122 |
tggtaataccttt-tttctacttttgcagttcatcacagtttctgcttgttatctattaatggttgttaaagctgaaaaaatgaaatgtagaaatataag |
220 |
Q |
| |
|
||||||||| ||| ||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38796075 |
tggtaatacttttgtttttagttttgcagttcatcacagtttctgcttgttatctattattggttgttaaagctgaaaaaatgaaatgtagaaatataag |
38795976 |
T |
|
| Q |
221 |
accagtcagcgtgatgtggcagaacttcttaacttgacttgcttaacatcacatttctttgctccttgcaagctacagtgaacattaaatgtgacgtggc |
320 |
Q |
| |
|
|||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |
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|
| T |
38795975 |
accattaagcgtgatgtggctgaacttcttaacttgacatgcttaacatcacatttctttgctccttgcaagttacaatgaacattaaatgtgatgtggc |
38795876 |
T |
|
| Q |
321 |
agaacttaacttgctacaatttcctatcttttgaaccccttgtatgttctgctcaacttttctttcatttcatggatcttattggatttttaactgtcac |
420 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
38795875 |
agaacttaacttgctacaatttcctgtcttttgaaccccttgtatgttctgctcaacttttattttatttcatggaacttattggatttttaactgtcac |
38795776 |
T |
|
| Q |
421 |
acgtttcgatgctaaagaggcttaatcttctataacatgaataagttaagcatgttcaagagttctagctgagacaatttcataataaccatgcaaagta |
520 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |
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|
| T |
38795775 |
acgttttgatggtaaagaggcttaatcttctgtaacatgaataagttaagcgtgttcaagagttctagctgtgacaatttcataagaaccatgcaaagta |
38795676 |
T |
|
| Q |
521 |
atagtc-tgttatttagtctatgtttt |
546 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
38795675 |
atagtcatgttatttagtctatgtttt |
38795649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 284 - 521
Target Start/End: Complemental strand, 34730594 - 34730354
Alignment:
| Q |
284 |
ccttgcaagctacagtgaacattaaatgtgacgtggcagaactt---aacttgctacaatttcctatcttttgaaccccttgtatgttctgctcaacttt |
380 |
Q |
| |
|
||||||||| |||| || ||||||||||| | ||| |||||||| || | |||||||||||||||||||| || | ||| || |||||||||| ||| |
|
|
| T |
34730594 |
ccttgcaagttacaatggacattaaatgttatgtgacagaacttcttaattcgctacaatttcctatctttttaagctcttataagttctgctcattttt |
34730495 |
T |
|
| Q |
381 |
tctttcatttcatggatcttattggatttttaactgtcacacgtttcgatgctaaagaggcttaatcttctataacatgaataagttaagcatgttcaag |
480 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
34730494 |
tcttttatttcatgaatcttattggatttttaactgtcatacgtttcgatggtaaagaggcttaatcttctgtaacatgaataagttaagcgtgttcaag |
34730395 |
T |
|
| Q |
481 |
agttctagctgagacaatttcataataaccatgcaaagtaa |
521 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
34730394 |
agttctagctgtaacaattttataataaccatgcaaagtaa |
34730354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 34730910 - 34730707
Alignment:
| Q |
21 |
agaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcct |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| | ||||| |||| |||||| | |||||||||||||||||| ||||||||| | || |
|
|
| T |
34730910 |
agaagctgcagagaacaactttcacgtcacaatgcaaggcgacgtaagcatcagcctgaagcactccaatcaagtcaatcagttttgtcttc---acgct |
34730814 |
T |
|
| Q |
121 |
gtggtaatacct-tttttc--tacttttgcagttcatcacagtttctgcttgttatctattaatggttgttaaagctgaaaaaatgaaatgtagaaatat |
217 |
Q |
| |
|
|||||||||| | |||||| || |||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
34730813 |
gtggtaatacttatttttcaatagttttgcagtttatctcagtttctgcttgttatctatgtttgggtgttaaagctgaaaaaatgaactgtggaaatat |
34730714 |
T |
|
| Q |
218 |
aagacca |
224 |
Q |
| |
|
||||||| |
|
|
| T |
34730713 |
aagacca |
34730707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 34726700 - 34726490
Alignment:
| Q |
17 |
gaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttca |
116 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||| |||| | |||||||||||||| | || ||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
34726700 |
gaagaaaagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatcgtcaagctgtccaatcaagccaatcggctttgtcttattca |
34726601 |
T |
|
| Q |
117 |
tcctgtggtaatac---cttttttctacttttgcagttcatcacagtttctgcttgttatctattaatggttgttaaagctgaaaaaatgaaatgtagaa |
213 |
Q |
| |
|
| |||||||||| |||| ||| |||||||||| ||| ||||| |||||||||||| | || |||||||||||||||||| ||||||||||| |
|
|
| T |
34726600 |
cgcagtggtaatacttatttttctctgattttgcagtttatctcagttcatgcttgttatctgattttgattgttaaagctgaaaaaacgaaatgtagaa |
34726501 |
T |
|
| Q |
214 |
atataagacca |
224 |
Q |
| |
|
|| |||||||| |
|
|
| T |
34726500 |
atctaagacca |
34726490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 433 - 522
Target Start/End: Complemental strand, 34721110 - 34721020
Alignment:
| Q |
433 |
taaagaggcttaatcttctataacatgaataagttaa-gcatgttcaagagttctagctgagacaatttcataataaccatgcaaagtaat |
522 |
Q |
| |
|
|||||| |||||||| | | ||||| ||||||| ||| |||||||||||||||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
34721110 |
taaagatgcttaatcctttgtaacaagaataagataaagcatgttcaagagttctagcagtatcaatttcataataaccatgcagagtaat |
34721020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 34721572 - 34721459
Alignment:
| Q |
17 |
gaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttca |
116 |
Q |
| |
|
||||| |||||||||| ||| ||||||| |||||| |||| | |||||| || || | || ||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
34721572 |
gaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctcgtaaaactgcccaatcaagtcaatcagctttgtcttcgtca |
34721473 |
T |
|
| Q |
117 |
tcctgtggtaatac |
130 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34721472 |
ccctgtggtaatac |
34721459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 334 - 445
Target Start/End: Complemental strand, 34726324 - 34726214
Alignment:
| Q |
334 |
ctacaatttcctatcttttgaaccccttgtatgttctgctcaacttttctttcatttcatggatcttattggatttttaactgtcacacgtttcgatgct |
433 |
Q |
| |
|
|||||||| |||||||||| |||| |||||| |||||| ||| ||||| || ||||||||||||| |||||||||| || ||||| || | | |||| | |
|
|
| T |
34726324 |
ctacaattgcctatctttttaacctcttgtaagttctgttcat-ttttcatttatttcatggatctgattggattttcaattgtcatacatctggatggt |
34726226 |
T |
|
| Q |
434 |
aaagaggcttaa |
445 |
Q |
| |
|
||||| |||||| |
|
|
| T |
34726225 |
aaagatgcttaa |
34726214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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