View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16490_low_2 (Length: 442)
Name: NF16490_low_2
Description: NF16490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16490_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 43575281 - 43574869
Alignment:
| Q |
18 |
atgagaagcaaatagtttgtataagtaatttattatgttcacataacatcttgtataaaaatctatgttggattctaagcaaacatattacatatttgat |
117 |
Q |
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| T |
43575281 |
atgagaagcaaatagtttgtataagtaatttattatgttcacataacatcttgtataaaaatctatgttggattctaagcaaacatattacatatttgat |
43575182 |
T |
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| Q |
118 |
taattatgtcatagaaacagttgcttaatgtatggaaaataacttgtgtacctctttaatctgctaacgttatatctatccattaatcagcttaagctcg |
217 |
Q |
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| T |
43575181 |
taattatgtcatagaaacagctgcttaatgtatggaaaataacttgtgtacctctttaatctgctaacgttatatctatccattaatcagcttaaactcg |
43575082 |
T |
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| Q |
218 |
atactattagtttcatatgatcaaaaatcaaaatggcatgcttatatagcagaaaatttatctcaagttattaaaattatgcatgactttccaggtactt |
317 |
Q |
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| T |
43575081 |
atactattagtttcatatgatcaaaaatcaaaatggcatgcttatatagcagaaaatttatctcaagttattaaaattatgcatgactttccaggtactt |
43574982 |
T |
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| Q |
318 |
ctaggggacatgggaacggggaagacgagtttggttcttagatttgtcaaaggtcaattttcggaataccaggttgctatatgattgtttcttttcatta |
417 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43574981 |
ctaggggacatgggaacggggaagactagtttggttcttagatttgtcaaaggtcaattttcggaataccaggttgctatatgattgtttcttttcttta |
43574882 |
T |
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| Q |
418 |
tgtcttcatatca |
430 |
Q |
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| T |
43574881 |
tgtcttcacatca |
43574869 |
T |
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