View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16490_low_3 (Length: 340)

Name: NF16490_low_3
Description: NF16490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16490_low_3
NF16490_low_3
[»] chr2 (2 HSPs)
chr2 (16-322)||(17447810-17448116)
chr2 (19-116)||(17445509-17445606)
[»] chr6 (12 HSPs)
chr6 (41-322)||(33278790-33279068)
chr6 (16-188)||(33414567-33414739)
chr6 (27-188)||(33269540-33269705)
chr6 (16-188)||(33395051-33395225)
chr6 (16-164)||(31564969-31565117)
chr6 (16-167)||(33258215-33258367)
chr6 (60-175)||(33384041-33384156)
chr6 (16-69)||(33293092-33293145)
chr6 (16-148)||(33406911-33407043)
chr6 (16-130)||(33280362-33280476)
chr6 (132-188)||(33293020-33293076)
chr6 (16-113)||(33395858-33395955)
[»] scaffold0428 (3 HSPs)
scaffold0428 (41-217)||(15185-15352)
scaffold0428 (16-167)||(2336-2488)
scaffold0428 (16-130)||(13777-13891)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 17447810 - 17448116
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17447810 aagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttg 17447909  T
Q  116 ttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttcaaaaattatatcaggaacaaagtgagtg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17447910 ttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttcaaaaattatatcaggaacaaagtgagtg 17448009  T
Q  216 tcgtacaaacaaatctgcgatgaaggtggtgtttcgattactgcaacgcttatagaggtcccatgacactcactttgatcctaatatgatgttagacggt 315  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  17448010 tcgtacaaacaaatctgcgatgaaggtggtgtttcgattattgcaacgcttatagaggttccatgacactcactttgatcctaatatgatgttagatggt 17448109  T
Q  316 ttcaatt 322  Q
    |||||||    
T  17448110 ttcaatt 17448116  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 17445509 - 17445606
Alignment:
Q  19 aaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgt 116  Q
    |||||||| || || ||| ||||| ||| ||||||||||| |||||| ||  || ||| ||||| ||||||||||  ||||| ||||||| |||||||    
T  17445509 aaatccggcaggctagcaactgaaagaaaaatcggtacattcattcatgactcatgcaacggtgttctaattgaagggaactgtgaaaccaactttgt 17445606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 41 - 322
Target Start/End: Complemental strand, 33279068 - 33278790
Alignment:
Q  41 aaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaagga 140  Q
    |||||||||| |||||||||||||||||| ||| |||| ||| |||||||||| | |||| |||||||||||||| |||||||||  ||| ||||||       
T  33279068 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa--- 33278972  T
Q  141 gttggttgatgatcttgcaatgcaagtggctgcttttccacaggttcaaaaattatatcaggaacaaagtgagtgtcgtacaaacaaatctgcgatgaag 240  Q
          |||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| || |||||||| |||| |||||    
T  33278971 ------tgatgaacttgcaatgcaagtggctggtattccacaggttcaaaaattatattaggaacaaagtgagtgtcatataaacaaatatgcggtgaag 33278878  T
Q  241 gtggtgtttcgattactgcaacgcttatagaggtcccat------gacactcactttgatcctaatatgatgttagacggtttcaatt 322  Q
    ||||||||||||||| |||||||||||||||||| ||||      ||| |||||||||||||||||||||| ||||| ||||||||||    
T  33278877 gtggtgtttcgattaatgcaacgcttatagaggttccattactacgacgctcactttgatcctaatatgattttagatggtttcaatt 33278790  T

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Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 33414739 - 33414567
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttg 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |||||| |||||| |||||||    
T  33414739 aagaaatccggaagactagcagctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttg 33414640  T
Q  116 ttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttca 188  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  33414639 ttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttca 33414567  T

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Target: chr6; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 33269705 - 33269540
Alignment:
Q  27 aagactggcagctgaaggaagaatcggtacata----cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcag 122  Q
    |||||| |||||||||| |||||||||||||||    ||||||| ||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  33269705 aagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttctaattgaagtgaactgtgaaaccgactttgttggcag 33269606  T
Q  123 aagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttca 188  Q
    ||| |||| ||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  33269605 aagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttca 33269540  T

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Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 33395225 - 33395051
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttg 115  Q
    ||||||||||| || || |||||||||||||||||||||| ||||||| ||||||||||||||  || ||| |||||| |||||| ||||||||||||||    
T  33395225 aagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttg 33395126  T
Q  116 ttgg--cagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttca 188  Q
    ||||  |||||| || ||||||||||||||||||| ||||||| ||||||||  |||||||| ||||||||||||    
T  33395125 ttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaataggctgcttgtccacaggttca 33395051  T

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Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 31564969 - 31565117
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttg 115  Q
    ||||||||||||||||  |  ||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||| |||| | |||||| ||||||     
T  31564969 aagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcattagtgttctaattgaagtgaaatgtgaaacggacttta 31565068  T
Q  116 ttggcagaagggagagattcaaggagttggttgatgatcttgcaatgca 164  Q
    | || ||||| |||| |||||||||||||||| ||||||||||||||||    
T  31565069 tcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 33258367 - 33258215
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgacttt 114  Q
    ||||||||||| ||||| ||||  |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| |||||  |||||||||||||    
T  33258367 aagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgacttt 33258268  T
Q  115 gttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagt 167  Q
    ||||||||||| |||| ||| |||||||||||||| |||||||||||||||||    
T  33258267 gttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 33258215  T

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Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 33384156 - 33384041
Alignment:
Q  60 cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgca 159  Q
    ||||||| || ||| |||||||| |||||||||| |||||| | ||||||||||||| |||||||| |||| | | ||||||||||||||||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  160 atgcaagtggctgctt 175  Q
    ||||||||||||||||    
T  33384056 atgcaagtggctgctt 33384041  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 33293145 - 33293092
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgat 69  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||    
T  33293145 aagaaatccagaagactagcagctgaaggaagaattggtacatacattcacgat 33293092  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 33407043 - 33406911
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttg 115  Q
    ||||||||| ||||||| ||||| || |||| || ||||||||| ||| || ||  | ||||  ||| | |||||| | |||||| ||||||||||||||    
T  33407043 aagaaatccagaagactagcagccgatggaaaaaccggtacatatattgacaatttatgcattagtgttataattgtagtgaactatgaaaccgactttg 33406944  T
Q  116 ttggcagaagggagagattcaaggagttggttg 148  Q
    |||||||||| |||  |||| ||||||||||||    
T  33406943 ttggcagaagtgagcaattcgaggagttggttg 33406911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 33280476 - 33280362
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttg 115  Q
    ||||||||||||||| |   |||||||||| ||||| |||| |||||||||||| ||||||| |||  |||| ||||| | |||| ||| || ||||||     
T  33280476 aagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactgactttt 33280377  T
Q  116 ttggcagaagggaga 130  Q
    |||||||||| ||||    
T  33280376 ttggcagaagtgaga 33280362  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 33293076 - 33293020
Alignment:
Q  132 attcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttca 188  Q
    |||||||||||||||| ||||||||||||||||||| |||||| |||  ||||||||    
T  33293076 attcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttca 33293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 33395955 - 33395858
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactt 113  Q
    ||||||||  |||||||  |||| ||||||| || ||||||||| |||||| || || ||||  ||| |||| |||||||||||| ||||||||||||    
T  33395955 aagaaatcgagaagactaacagccgaaggaaaaaccggtacataaattcacaattcatgcattagtgttctagttgaattgaactatgaaaccgactt 33395858  T

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Target: scaffold0428 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 15185 - 15352
Alignment:
Q  41 aaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaagga 140  Q
    |||||||||| |||||||||||||||||| ||| |||| ||| |||||||||| | |||| |||||||||||||| |||||||||  ||| ||||||       
T  15185 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa--- 15281  T
Q  141 gttggttgatgatcttgcaatgcaagtggctgcttttccacaggttcaaaaattatatcaggaacaaagtgagtgtc 217  Q
          |||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||    
T  15282 ------tgatgaacttgcaatgcaagtggctggtattccacaggttcaaaaattatattaggaacaaagtgagtgtc 15352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 2488 - 2336
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacata-cattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgacttt 114  Q
    ||||||||||| ||||| ||||  |||||||||||||||||||| || || |||| ||| ||| |||| |||||||||| |||||  |||||||||||||    
T  2488 aagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccgacttt 2389  T
Q  115 gttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagt 167  Q
    ||||||||||| |||| ||| |||||||||||||| |||||||||||||||||    
T  2388 gttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagt 2336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 13777 - 13891
Alignment:
Q  16 aagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttg 115  Q
    ||||||||||||||| |   |||||||||| ||||| |||| |||||||||||| ||||||| |||  |||| ||||| | |||| ||| || ||||||     
T  13777 aagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactgactttt 13876  T
Q  116 ttggcagaagggaga 130  Q
    |||||||||| ||||    
T  13877 ttggcagaagtgaga 13891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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