View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16490_low_4 (Length: 305)
Name: NF16490_low_4
Description: NF16490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16490_low_4 |
 | |
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| [»] chr5 (8 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 1044284 - 1043997
Alignment:
| Q |
18 |
ccaccatgtgacagtaaagaatattgtacttattgagagcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1044284 |
ccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgc |
1044185 |
T |
|
| Q |
118 |
aaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1044184 |
aaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccaaaggaaatcgacaacgattctcgagggatcca |
1044085 |
T |
|
| Q |
218 |
ccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1044084 |
ccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
1043997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 1033897 - 1033610
Alignment:
| Q |
18 |
ccaccatgtgacagtaaagaatattgtacttattgagagcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||| || ||| || |
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|
| T |
1033897 |
ccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccgc |
1033798 |
T |
|
| Q |
118 |
aaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcca |
217 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||||||||||||||||| || ||||||||||||| | |||||||||||||||||| ||||||||| |
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|
| T |
1033797 |
aaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctcaagggatcca |
1033698 |
T |
|
| Q |
218 |
ccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
305 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
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|
| T |
1033697 |
ccatattcatctgttctatcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaagttcaacaccatcaa |
1033610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 1071626 - 1071339
Alignment:
| Q |
18 |
ccaccatgtgacagtaaagaatattgtacttattgagagcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgc |
117 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||||||| ||||||||||||| |||||||||||| || || ||||||||||| | ||||| ||| ||||| |
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|
| T |
1071626 |
ccaccatgtgacaataaagaataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtctccacattctgaatactctgc |
1071527 |
T |
|
| Q |
118 |
aaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcca |
217 |
Q |
| |
|
||||||||||| ||| ||||||||| | |||| |||||||||||| |||| |||||||||||||||| || ||| |||||||| ||||| ||||||||| |
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|
| T |
1071526 |
aaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagcaaaccgacaacggttctcaagggatcca |
1071427 |
T |
|
| Q |
218 |
ccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
305 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
1071426 |
ccatactcatctgtcctgtcattcactttatctttcatgaattgttcaaggaggtagccatgagctccatggatttcaaccccatcaa |
1071339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 1065899 - 1065612
Alignment:
| Q |
18 |
ccaccatgtgacagtaaagaatattgtacttattgagagcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgc |
117 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||| ||||| ||||||| |||||||||||||||||| ||||||||||| | ||||||||| || || |
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|
| T |
1065899 |
ccaccatatgacagtaaagaataccatatttattgagggcattgaccatataaagtcccaattcattggggttggagtctccacattctgcatactccgc |
1065800 |
T |
|
| Q |
118 |
aaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcca |
217 |
Q |
| |
|
||||||||||| ||| ||||||||| | ||||||||||||||||| |||| |||||||||||||||| || ||||||||| || ||||| || || ||| |
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|
| T |
1065799 |
aaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagcaaatcgacagcggttctccagagaccca |
1065700 |
T |
|
| Q |
218 |
ccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
305 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1065699 |
ccatattcatctgtcctgtcattcactttatctttcatgaattgctcaaggaggtagccatgagctccatggatttcaaccccatcaa |
1065612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 1640659 - 1640946
Alignment:
| Q |
18 |
ccaccatgtgacagtaaagaatattgtacttattgagagcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||| |||||||| | |||||||||||||| | |||| |||||||||| |
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|
| T |
1640659 |
ccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgc |
1640758 |
T |
|
| Q |
118 |
aaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcca |
217 |
Q |
| |
|
||||| |||| ||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||| || ||||||||||| || || |||| |||| |
|
|
| T |
1640759 |
gaaaggcgataatctaattccaactctttctgcacctatctcattcacaactgcttcaacaatttccaaagcgaatcgacaacggttttcaagggttcca |
1640858 |
T |
|
| Q |
218 |
ccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
305 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||| ||||||||||||| |
|
|
| T |
1640859 |
ccgtatttatcagttcggtcattcactttatctttcataaattgctcaagtaggtaaccgtgagccccatggatctcaactccatcaa |
1640946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 305
Target Start/End: Complemental strand, 1058799 - 1058520
Alignment:
| Q |
26 |
tgacagtaaagaatattgtacttattgagagcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgcaaaaggtg |
125 |
Q |
| |
|
||||||||||||||| || |||||||| |||||| |||||| |||||||||||| ||||||| |||||| | | |||||||||||||| |||||||| |
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|
| T |
1058799 |
tgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtg |
1058700 |
T |
|
| Q |
126 |
atagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattc |
225 |
Q |
| |
|
||| |||||||||| | ||||||| ||||||||||| |||| |||||||||||||||| | || |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
1058699 |
ataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattc |
1058600 |
T |
|
| Q |
226 |
atctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
305 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
1058599 |
atctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaa |
1058520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 1053542 - 1053255
Alignment:
| Q |
18 |
ccaccatgtgacagtaaagaatattgtacttattgagagcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgc |
117 |
Q |
| |
|
||||||| ||||| ||||||||| || |||||||| ||||| ||||||| |||||||||||| | |||||| |||||||| | ||| || ||| | | |
|
|
| T |
1053542 |
ccaccatatgacaataaagaataccatatttattgagggcattcaccatataaagtcccaattcttggggatttgagtctccacaatctccaaatttttc |
1053443 |
T |
|
| Q |
118 |
aaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatcca |
217 |
Q |
| |
|
||||||||||| | | ||||||||| | ||||| ||||||||||| |||| |||||||||| ||||| | ||||| ||||||||| || |||| |||| |
|
|
| T |
1053442 |
aaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaagggttcca |
1053343 |
T |
|
| Q |
218 |
ccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
305 |
Q |
| |
|
|| ||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1053342 |
ccatattcatctgttctgtcgtttgctttatctttcatgaattgttcaactaggtagccatgagctccatggatttcaaccccatcaa |
1053255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 305
Target Start/End: Complemental strand, 1046838 - 1046580
Alignment:
| Q |
47 |
ttattgagagcattaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttat |
146 |
Q |
| |
|
|||||||| ||||||||||| | ||| |||||| | || ||||| |||||||| | |||| | | |||| ||||||||||||| | ||||||||| | | |
|
|
| T |
1046838 |
ttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaaaaggtgatagttttattccaactcttt |
1046739 |
T |
|
| Q |
147 |
ctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcacttt |
246 |
Q |
| |
|
| || || |||||||| ||||| |||||||||| ||||| | |||| |||||| || || || | |||||| |||||||||||||||||||||||||| |
|
|
| T |
1046738 |
cggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattcatctgttctgtcattcacttt |
1046639 |
T |
|
| Q |
247 |
atctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
305 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||| ||| | |||||||| ||||||| |
|
|
| T |
1046638 |
atctttcatgaattgctcaagtaggtatccagtagccccacgaatttcaaccccatcaa |
1046580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 130 - 305
Target Start/End: Original strand, 44171262 - 44171437
Alignment:
| Q |
130 |
tctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatct |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| | ||| || ||||| ||||||||||| ||||||||| |
|
|
| T |
44171262 |
tctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatct |
44171361 |
T |
|
| Q |
230 |
gttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
305 |
Q |
| |
|
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
44171362 |
gttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaa |
44171437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 130 - 305
Target Start/End: Original strand, 44191558 - 44191733
Alignment:
| Q |
130 |
tctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgattctcgagggatccaccgtattcatct |
229 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| | ||| || ||||| ||||||||||| ||||||||| |
|
|
| T |
44191558 |
tctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcatct |
44191657 |
T |
|
| Q |
230 |
gttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaa |
305 |
Q |
| |
|
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
44191658 |
gttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaa |
44191733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 54102841 - 54102925
Alignment:
| Q |
120 |
aaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccagaggaaatcgacaacgatt |
204 |
Q |
| |
|
||||||| ||||||| |||||||| || ||||| ||||||| |||||||||| ||||| || ||||| || ||||||||||| |
|
|
| T |
54102841 |
aaggtgaaagtctaacaccaactttgtcagctccaatctcatcaacaactgctttcacaacctctagagggaagcgacaacgatt |
54102925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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