View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16491_low_4 (Length: 251)

Name: NF16491_low_4

Description: NF16491

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16491_low_4

[»] chr1 (4 HSPs)

[»] scaffold0710 (1 HSPs)

Alignment Details

Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 4)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 231; E-Value: 1e-127

Query Start/End: Original strand, 13 - 251

Target Start/End: Original strand, 51772129 - 51772367

Alignment:

Q	13	aagaatatggtgagtacccttgtaagactgagatgtgtttccaattgttattgcatatatagtttatgaagtccatgccttttgtctgcaatatctatat	112	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51772129	aagaacatggtgagtacccttgtaagactgagatgtgtttccaattgttattgcatatatagtttatgaagtccatgccttttgtctgcaatatctatat	51772228	T

Q	113	cagtttatgaactcctcatatagtcatttactcgatcgtttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaa	212	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51772229	cagtttatgaactcctcgtatagtcatttactcgatcgtttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaa	51772328	T

Q	213	acaattaagagaaaattgagcttaggggctcaaattctt	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51772329	acaattaagagaaaattgagcttaggggctcaaattctt	51772367	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2

Raw Score: 61; E-Value: 3e-26

Query Start/End: Original strand, 151 - 251

Target Start/End: Original strand, 51780133 - 51780233

Alignment:

Q	151	tttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattct	250	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	51780133	tttctaatcctattttatataattctgaaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattct	51780232	T

Q	251	t	251	Q
		\|
T	51780233	t	51780233	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3

Raw Score: 42; E-Value: 0.000000000000006

Query Start/End: Original strand, 178 - 251

Target Start/End: Original strand, 51807869 - 51807942

Alignment:

Q	178	aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattctt	251	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51807869	aaatttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattctt	51807942	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 21 - 54

Target Start/End: Original strand, 51807718 - 51807751

Alignment:

Q	21	ggtgagtacccttgtaagactgagatgtgtttcc	54	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	51807718	ggtgagtacccttgtaagacttagatgtgtttcc	51807751	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 61; Significance: 3e-26; HSPs: 1)

Name: scaffold0710

Description:

Target: scaffold0710; HSP #1

Raw Score: 61; E-Value: 3e-26

Query Start/End: Original strand, 151 - 251

Target Start/End: Original strand, 6775 - 6875

Alignment:

Q	151	tttctaatcctattatatataattcttaaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattct	250	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	6775	tttctaatcctattttatataattctgaaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattct	6874	T

Q	251	t	251	Q
		\|
T	6875	t	6875	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]