View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16492_high_1 (Length: 546)
Name: NF16492_high_1
Description: NF16492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16492_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 503; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 24555469 - 24554939
Alignment:
| Q |
1 |
ataggataatggaatacaagatcaacttctttgatcaaaacaagtagaattattcatcataagaaaggaataaatacaattactccacttattcattaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24555469 |
ataggataatggaatacaagatcaacttctttgatcaaaacaagtacaattattcatcataagaaaggaataaatacaattactccacttattcattaaa |
24555370 |
T |
|
| Q |
101 |
acccatactaaataggtaatgcactatttgcactatttccagatttaatagaagcagcatcaacaaatacaacagaataagcatcaattgcagtcaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
24555369 |
acccatactaaataggtaatgcactatttgcactatttccagatttaatagaagcagcatcaacaaatacaacagaataagcattaattgcagtcaaaat |
24555270 |
T |
|
| Q |
201 |
caaacgtgatccaccttcaccagaattaaactcttgtaatccaagataagcacaatcacctgttgtatccaaacaaaatccaaccctataagcattacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24555269 |
caaacgtgatccaccttcaccagaattaaactcttgtaatccaagataagcacaatcacctgttgtatccaaacaaaatccaaccctataagcattacca |
24555170 |
T |
|
| Q |
301 |
gatccatgtttcaaaattaaaaattttccactaattaattctacaccaggatagtttgcaggaccaccaataccaacaaaacttagttgagtgacatgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24555169 |
gatccatgtttcaaaattaaaaattttccactaattaattctacaccaggatagtttgcaggaccaccaataccaacaaaacttagttgagtgacatgat |
24555070 |
T |
|
| Q |
401 |
caacaaccatcaaccatttggaagattcagcacaatcaggcttcttagtgaactcgatctcaagatcggtaccggtaacgatattactagtgctgttttc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24555069 |
caacaaccatcaaccatttggaagattcagcacaatctggcttgttaatgaactcgatctcaagatcggtaccggtaacgatgttactagtgctgttttc |
24554970 |
T |
|
| Q |
501 |
aagtatggtgaatttaactggtaaaccagtt |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24554969 |
tagtatggtgaatttaactggtaaaccagtt |
24554939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 156 - 527
Target Start/End: Complemental strand, 2917335 - 2916964
Alignment:
| Q |
156 |
agcatcaacaaatacaacagaataagcatcaattgcagtcaaaatcaaacgtgatccaccttcaccagaattaaactcttgtaatccaagataagcacaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||| ||| | ||||| |||| ||||| |
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|
| T |
2917335 |
agcatcaacaaatacaacagaataagcatcaactgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttgaagtccaatataaccacaa |
2917236 |
T |
|
| Q |
256 |
tcacctgttgtatccaaacaaaatccaaccctataagcattaccagatccatgtttcaaaattaaaaattttccactaattaattctacaccaggatagt |
355 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||| ||||| ||||| ||| ||||| |||| |||||| |
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|
| T |
2917235 |
tcaccagttacatccaaacaaaatccaagcctataaacatgaccagatccatgtttcactattaagaatttgccacttattgtttctataccatgatagt |
2917136 |
T |
|
| Q |
356 |
ttgcaggaccaccaataccaacaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatcaggcttcttagtgaactc |
455 |
Q |
| |
|
||| | |||||||||||||||| ||||||||||||| |||||||| || |||||||||||| || |||||||||||||||||||||||||| ||||| |
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|
| T |
2917135 |
ttgttgcaccaccaataccaacacaacttagttgagtattatgatcaagaaacatcaaccattttgatgattcagcacaatcaggcttcttagtaaactc |
2917036 |
T |
|
| Q |
456 |
gatctcaagatcggtaccggtaacgatattactagtgctgttttcaagtatggtgaatttaactggtaaacc |
527 |
Q |
| |
|
||||||||||||||||| || | |||||||| ||| ||||||| | | ||||||||||||||||||||| |
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|
| T |
2917035 |
aatctcaagatcggtaccagtcaagatattaccggtgttgttttctgggacggtgaatttaactggtaaacc |
2916964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 160 - 527
Target Start/End: Complemental strand, 2930919 - 2930552
Alignment:
| Q |
160 |
tcaacaaatacaacagaataagcatcaattgcagtcaaaatcaaacgtgatccaccttcaccagaattaaactcttgtaatccaagataagcacaatcac |
259 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| ||| ||| | ||||| ||| |||||| | |
|
|
| T |
2930919 |
tcaacaaatagaacagaataaacatcaattgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttgaagtccaatatagccacaatttc |
2930820 |
T |
|
| Q |
260 |
ctgttgtatccaaacaaaatccaaccctataagcattaccagatccatgtttcaaaattaaaaattttccactaattaattctacaccaggatagtttgc |
359 |
Q |
| |
|
| ||| ||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||| ||||| ||||| ||| ||||| |||| ||||||||| |
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|
| T |
2930819 |
cagttacatccaaacaaaatccaagcctataaacatgaccagatccatgtttcactattaagaatttgccacttattgtttctataccatgatagtttgt |
2930720 |
T |
|
| Q |
360 |
aggaccaccaataccaacaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatcaggcttcttagtgaactcgatc |
459 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| || | |||||||||||||| ||| ||||||||||||||| |
|
|
| T |
2930719 |
tgcaccaccaataccaacacaacttagttgagtattatgatcaacaaacatcaaccattttgatgcttcagcacaatcagcctttttagtgaactcgatc |
2930620 |
T |
|
| Q |
460 |
tcaagatcggtaccggtaacgatattactagtgctgttttcaagtatggtgaatttaactggtaaacc |
527 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
2930619 |
tcaagatcggtaccggtcaagatattaccagtgctgttttctgggatggtgaatttaactggtaaacc |
2930552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 140 - 527
Target Start/End: Complemental strand, 24567039 - 24566646
Alignment:
| Q |
140 |
cagatttaatagaagcagcatcaacaaatacaacagaataagcatcaattgcagtcaaaatcaaacgtgatccaccttcaccagaattaaactcttgtaa |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||| |||||| || | ||||| || || || |
|
|
| T |
24567039 |
cagatttaatagaagcagcatcaacaaaaacaacagaataagcatcattcacagtaaaaatcaaacgtggtccaccatcttcggaattgaaaaattccaa |
24566940 |
T |
|
| Q |
240 |
tccaagataagcacaatcacctgttgtatccaaacaaaatccaaccctataagcattaccagatccatgtt------tcaaaattaaaaattttccacta |
333 |
Q |
| |
|
| ||| | || ||||||| || |||||||||||||||||||||| ||||||||||| |||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
24566939 |
tgcaataaaaccacaatctccagttgtatccaaacaaaatccaatcctataagcatgaccagatccatgttgatgtttcactactaaaaattttccactg |
24566840 |
T |
|
| Q |
334 |
attaattctacaccaggatagtttgcaggaccaccaataccaacaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcac |
433 |
Q |
| |
|
|| |||||||||||||| ||| |||| |||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||| || |||| ||| | |
|
|
| T |
24566839 |
gttgtttctacaccaggattgttcgcagaaccaccaataccgacaaaacttagttgagtgtcatgatcaacaaacatcgaccatttcgacgatttagcgc |
24566740 |
T |
|
| Q |
434 |
aatcaggcttcttagtgaactcgatctcaagatcggtaccggtaacgatattactagtgctgttttcaagtatggtgaatttaactggtaaacc |
527 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| ||||| | | ||||||||||||||| ||||| | ||| ||||||||||||||||||| |
|
|
| T |
24566739 |
aatcaggcttcgtagtgaactcaatctcaagatcagtacctggcaagatattactagtgctattttctaacatgctgaatttaactggtaaacc |
24566646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 345 - 463
Target Start/End: Complemental strand, 20475895 - 20475777
Alignment:
| Q |
345 |
accaggatagtttgcaggaccaccaataccaacaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatcaggcttc |
444 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||| || | |||| | ||| |||||||| ||||||||||| || |||||| | |||| ||||||| |
|
|
| T |
20475895 |
accaggataattttcaggaccaccaataccaacacaagctttttgaataacactatcaacaaatatcaaccattttgatgattcaacgcaattaggcttc |
20475796 |
T |
|
| Q |
445 |
ttagtgaactcgatctcaa |
463 |
Q |
| |
|
|| ||||||||||| |||| |
|
|
| T |
20475795 |
tttgtgaactcgatatcaa |
20475777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 461
Target Start/End: Complemental strand, 20505699 - 20505583
Alignment:
| Q |
345 |
accaggatagtttgcaggaccaccaataccaacaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatcaggcttc |
444 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| || || | | | |||| ||||| || ||||||||||| || |||||| |||||||||||||| |
|
|
| T |
20505699 |
accaggatagttttctcgaccaccaataccaacacaaaatatattaataacattatcaataaatatcaaccattttgatgattcaacacaatcaggcttc |
20505600 |
T |
|
| Q |
445 |
ttagtgaactcgatctc |
461 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
20505599 |
tttgtgaactcaatctc |
20505583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 24567088 - 24567047
Alignment:
| Q |
82 |
actccacttattcattaaaacccatactaaataggtaatgca |
123 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
24567088 |
actccacttattcattacaactcatactaaataggcaatgca |
24567047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 20517723 - 20517691
Alignment:
| Q |
348 |
aggatagtttgcaggaccaccaataccaacaaa |
380 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
20517723 |
aggatagttttcaggaccaccaataccaacaaa |
20517691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 463
Target Start/End: Original strand, 13072251 - 13072369
Alignment:
| Q |
345 |
accaggatagtttgcaggaccaccaataccaacaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatcaggcttc |
444 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| || | |||| | |||| |||||||| ||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
13072251 |
accaggatagttttctggaccaccaataccaacacaagatttttgaataacattatcaacaaatatcaaccattttgaagattcaacacaatcaggcttc |
13072350 |
T |
|
| Q |
445 |
ttagtgaactcgatctcaa |
463 |
Q |
| |
|
|| ||||||||| |||| |
|
|
| T |
13072351 |
ctaacgaactcgatatcaa |
13072369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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