View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16492_low_2 (Length: 405)
Name: NF16492_low_2
Description: NF16492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16492_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 3895186 - 3895519
Alignment:
| Q |
1 |
gagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggag |
100 |
Q |
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| T |
3895186 |
gagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggag |
3895285 |
T |
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| Q |
101 |
aaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaacggcagaga |
200 |
Q |
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| T |
3895286 |
aaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctgagaaaacggcggaga |
3895385 |
T |
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| Q |
201 |
agacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgc |
300 |
Q |
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| T |
3895386 |
agacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgc |
3895485 |
T |
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| Q |
301 |
aacacaaaagatcaaggagactgttgttggaaag |
334 |
Q |
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| T |
3895486 |
aacacaaaagatcaaggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 3895139 - 3895265
Alignment:
| Q |
20 |
gagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattatgctt |
119 |
Q |
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| T |
3895139 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgctt |
3895238 |
T |
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| Q |
120 |
atgatgcaaaggaaagaaccaaggaag |
146 |
Q |
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| T |
3895239 |
atgatgccaaggatagaacaaaggaag |
3895265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
356 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
392 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 3895016 - 3895079
Alignment:
| Q |
83 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaag |
146 |
Q |
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| T |
3895016 |
gcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaag |
3895079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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