View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16492_low_3 (Length: 353)
Name: NF16492_low_3
Description: NF16492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16492_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 45634060 - 45633773
Alignment:
| Q |
20 |
tgttagatccatggacacagttgtgaagttatttagaannnnnnngaagtatagatccagagaacattcttaacttgcagtagtccatttttaaattagg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45634060 |
tgttagatccatggacacagttgtgaagttatttagaatttttttgaagtatagatccagagaacatacttaacttgcagtagtccatttttaaattagg |
45633961 |
T |
|
| Q |
120 |
gatcattaaaacctacaggagaaaaacaattgtcactgactttagatttctattactgtannnnnnnaaaacttcaatgtttaacaatggtcaaacaatt |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45633960 |
gatcattaaaacctacatgagaaaaacaattgtcactgactttagatttatattactgtatttttttaaaacttcaatgtttaacaatggtcaaacaatt |
45633861 |
T |
|
| Q |
220 |
aatctgagaaatgatagatcgaccactttcttttgtacaccctttactacacctgctgatgtggcatcttttgcctggtggaaattaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45633860 |
aatctgagaaatgatagatcgaccactttgttttgtacaccctttactacacctgctgatgtggcatcttttgcctggtggaaattaa |
45633773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University