View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16492_low_4 (Length: 244)
Name: NF16492_low_4
Description: NF16492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16492_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 84 - 244
Target Start/End: Original strand, 3895045 - 3895205
Alignment:
| Q |
84 |
ctatgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggataaagccagagaaggaacaaatagggctgcagagaaggctgagaat |
183 |
Q |
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| T |
3895045 |
ctatgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggataaagccagagaaggaacaaatagggctgcagagaaggctgagaat |
3895144 |
T |
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| Q |
184 |
gctggagagaaggctagagattatgcttatgatgcagaggagagaacaaaggatgcagcag |
244 |
Q |
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| T |
3895145 |
gctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcag |
3895205 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 3894962 - 3895056
Alignment:
| Q |
121 |
gcaggttctgtgtgggataaagccagagaaggaacaaatagggctgcagagaaggctgagaatgctggagagaaggctagagattatgcttatga |
215 |
Q |
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| T |
3894962 |
gcaggttcaatgtgggagaaagccaaagaaggaacagacagagctgcagagaaggcagagaatgctggagagaaagctagagactatgcttatga |
3895056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 3895271 - 3895329
Alignment:
| Q |
178 |
gagaatgctggagagaaggctagagattatgcttatgatgcagaggagagaacaaagga |
236 |
Q |
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| T |
3895271 |
gagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaagga |
3895329 |
T |
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