View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16493_high_2 (Length: 286)

Name: NF16493_high_2
Description: NF16493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16493_high_2
NF16493_high_2
[»] chr2 (8 HSPs)
chr2 (14-268)||(7156181-7156446)
chr2 (144-202)||(7174503-7174561)
chr2 (23-72)||(7160752-7160801)
chr2 (23-67)||(6538843-6538887)
chr2 (14-72)||(7199967-7200025)
chr2 (158-203)||(7160901-7160946)
chr2 (23-72)||(7168688-7168737)
chr2 (14-70)||(7174362-7174418)
[»] chr6 (2 HSPs)
chr6 (143-204)||(9825635-9825696)
chr6 (143-204)||(9819955-9820016)
[»] chr3 (3 HSPs)
chr3 (23-72)||(2442043-2442092)
chr3 (23-72)||(4142132-4142181)
chr3 (23-72)||(4157942-4157991)
[»] chr5 (1 HSPs)
chr5 (24-72)||(11081817-11081865)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 7156181 - 7156446
Alignment:
Q  14 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagcca-----------aagtatcaccatgacaaagtatgcacaaacaa 102  Q
    |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||           ||||||||||||||||||||||||||||||||    
T  7156181 aggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatctgccaaagtatcaccatgacaaagtatgcacaaacaa 7156280  T
Q  103 tccatcatcacatttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7156281 tccatcatcacatttaagattggagaaaacacagacatccctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 7156380  T
Q  203 tgcttcgtgtataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7156381 tgcttcgtgtataaggaaaacgatgttctgcttcaaaccaattaaaagttccactaacgaaatttc 7156446  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 7174503 - 7174561
Alignment:
Q  144 tccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaa 202  Q
    |||||||||||||||||||||||||| | |||||||  ||||||||| || ||||||||    
T  7174503 tccataatcaggctgcaatatctctccataagactcattctccaaatgaagagaaacaa 7174561  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  23 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 72  Q
    ||||||||||| ||||||||| | ||||| ||||||||||||||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 6538887 - 6538843
Alignment:
Q  23 gaacaatttagcccaagaatcttcatttcgatactccttcataag 67  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||    
T  6538887 gaacaatttagtccaagaatctttatttccatactccttcataag 6538843  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 7199967 - 7200025
Alignment:
Q  14 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 72  Q
    |||| ||| ||||||| |||||||||||| |||||||| | |||||||||||| |||||    
T  7199967 aggaacacggaacaatctagcccaagaattttcatttccaaactccttcataacccaaa 7200025  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 7160901 - 7160946
Alignment:
Q  158 gcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaat 203  Q
    |||||| ||||||| |||||||| |||||||||||| |||||||||    
T  7160901 gcaatagctctcgataagactccttctccaaatcaagagaaacaat 7160946  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  23 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 72  Q
    ||||||||||| ||||||||| | ||||| ||| ||||||||||||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 7174362 - 7174418
Alignment:
Q  14 aggagcacagaacaatttagcccaagaatcttcatttcgatactccttcataagcca 70  Q
    |||| ||| ||||||| ||| ||||||||||| ||||| ||| ||||||||||||||    
T  7174362 aggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagcca 7174418  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 9825635 - 9825696
Alignment:
Q  143 ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg 204  Q
    ||||||||||||||||||| |||||| || | ||||| ||| ||||||||| ||||||||||    
T  9825635 ctccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatg 9825696  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 9819955 - 9820016
Alignment:
Q  143 ctccataatcaggctgcaatatctctcgaaaagactccgtctccaaatcaaaagaaacaatg 204  Q
    ||||||||||||||||||| |||||| || | |||||  || ||||||||| ||||||||||    
T  9819955 ctccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatg 9820016  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 2442092 - 2442043
Alignment:
Q  23 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 72  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  2442092 gaacaatttagtccaagaatctttatttccatactccttcataatccaaa 2442043  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 4142132 - 4142181
Alignment:
Q  23 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 72  Q
    ||||||||||| |||||| |||| ||||| ||| ||||||||||||||||    
T  4142132 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 4157942 - 4157991
Alignment:
Q  23 gaacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 72  Q
    ||||||||||| |||||| |||| ||||| ||| ||||||||||||||||    
T  4157942 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  24 aacaatttagcccaagaatcttcatttcgatactccttcataagccaaa 72  Q
    |||||||||| |||||| |||| ||||| |||||||||||||| |||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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