View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16493_high_5 (Length: 204)
Name: NF16493_high_5
Description: NF16493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16493_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 1855568 - 1855403
Alignment:
| Q |
17 |
aacctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaatt |
116 |
Q |
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| T |
1855568 |
aacctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaatt |
1855469 |
T |
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| Q |
117 |
actgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgcttgaaattgc |
182 |
Q |
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| T |
1855468 |
actgttgagatatccgaaactgtcacaaccaactgttatgaatttgttgtctgtgcttgaaattgc |
1855403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 1817623 - 1817787
Alignment:
| Q |
17 |
aacctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaagcatcctgtagaataagtggcacccttgaaatt |
116 |
Q |
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| T |
1817623 |
aacctgtgcattttccagtgttattcccaattactattttaggtttaaaatcataacatcttgttaagcaccctgttgaataagtgccacctgtgaaatt |
1817722 |
T |
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| Q |
117 |
actgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgcttgaaattg |
181 |
Q |
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| T |
1817723 |
actgttgagatatccgtaactgtcgcaaccaacggttatgaatttgttttccgtacttgaaattg |
1817787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 9220511 - 9220619
Alignment:
| Q |
68 |
cataacatcttgttaagcatcctgtagaataagtggcacccttgaaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtc |
167 |
Q |
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| T |
9220511 |
cataacatcttgttaagcaaccggttgaatatgtttcttcgttgtaaatactgttgagataaccgtaactgtcacaaccaaccgttatgaacttgttttc |
9220610 |
T |
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| Q |
168 |
tgtgcttga |
176 |
Q |
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| T |
9220611 |
agtgcttga |
9220619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 9158110 - 9158157
Alignment:
| Q |
117 |
actgttgagatatccgtaactgtcacaaccaactgttatgaatttgtt |
164 |
Q |
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| T |
9158110 |
actgttgagataaccgtaactgtcacaaccaaccgttacgaacttgtt |
9158157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 37567041 - 37566872
Alignment:
| Q |
19 |
cctgtgcactttccagtgttatttccaattaccattttagtatcaaaatcataacatcttgttaa-------gcatcctgtagaataagtggcacccttg |
111 |
Q |
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| T |
37567041 |
cctgtgcattttccagtgttattcccagttaccattttaggatcaaaatcataacatcttgttaactgttaagcatcctgtagaataagtggcacccttg |
37566942 |
T |
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| Q |
112 |
aaattactgttgagatatccgtaactgtcacaaccaactgttatgaatttgttgtctgtgcttgaaattg |
181 |
Q |
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| T |
37566941 |
aaattactgttgagatatccgtaactgtcgcaaccaacggttatgaatttgttttccgtgcttgaaattg |
37566872 |
T |
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