View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16493_low_1 (Length: 446)
Name: NF16493_low_1
Description: NF16493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16493_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 4726230 - 4726005
Alignment:
| Q |
14 |
atatgaaggaaaagggttatcatagaagtgcagaacagtgtaagtgcaagtggaaaaaccttgttactcgctataaggtatgttcaaaattttattcatg |
113 |
Q |
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| T |
4726230 |
atatgaaggaaaagggttatcatagaagtgcagaacagtgtaagtgcaagtggaaaaaccttgttactcgctataaggtatgttcaaaattttattcata |
4726131 |
T |
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| Q |
114 |
ta-tttcatattttgtttggagttgatgcgtatgaaaaaataattgtgaagaaatatcaatctttgaaatagatctaagttacttctttgtcnnnnnnnt |
212 |
Q |
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| T |
4726130 |
tattttcatattttgtttgaagttgatgcgtatgaaaaaataattgtgaagaaatatcgatctttgaaatagatctaagttacttctttgtcaaaaaaat |
4726031 |
T |
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| Q |
213 |
a-aataaatctaagttacttcttgtt |
237 |
Q |
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| T |
4726030 |
acaataaatctaagttacttcttgtt |
4726005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 219 - 446
Target Start/End: Complemental strand, 4725984 - 4725758
Alignment:
| Q |
219 |
atctaagttacttcttgttagtatctaagttgcacagattgatatatgatttacatnnnnnnngaaattcatatataattgttgtgtatgtgactcaaaa |
318 |
Q |
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| T |
4725984 |
atctaagttacttcttgttagtatctaagttgcgcagattgatatatgatttacataaaaaaagaaattcatatataattgttgtgtatgtgactcaaaa |
4725885 |
T |
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| Q |
319 |
tcttgaatatcaaattattaattacttaatctcttctctc--nnnnnnnnnttacttaatcacnnnnnnnaaaaattgtcacgccaagcatctggctaaa |
416 |
Q |
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| T |
4725884 |
tcttgaaaatcaaattattaattacttaatctcttctctcaaaaaaaaaaagtacttaatcactttttttaaaaattgtcacgccaagcatctggctaaa |
4725785 |
T |
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| Q |
417 |
cattagtctactagtatatcataaggtggg |
446 |
Q |
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| T |
4725784 |
cattagtctac---tatatcataaggtggg |
4725758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 25258559 - 25258638
Alignment:
| Q |
15 |
tatgaaggaaaagggttatcatagaagtgcagaacagtgtaagtgcaagtggaaaaaccttgttactcgctataaggtat |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25258559 |
tatgaaggaaaagggttatcatagaagtgcagaacagtgcaagtgcaagtggaaaaaccttgttactcgctataaggtat |
25258638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 10916053 - 10916005
Alignment:
| Q |
46 |
gaacagtgtaagtgcaagtggaaaaaccttgttactcgctataaggtat |
94 |
Q |
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||||||||||| ||||||||||| || ||||||| |||||||||||||| |
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| T |
10916053 |
gaacagtgtaaatgcaagtggaagaatcttgttaatcgctataaggtat |
10916005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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