View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16493_low_2 (Length: 420)

Name: NF16493_low_2
Description: NF16493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16493_low_2
NF16493_low_2
[»] chr5 (1 HSPs)
chr5 (11-402)||(41628001-41628395)
[»] chr2 (12 HSPs)
chr2 (24-95)||(30394190-30394261)
chr2 (24-84)||(30475355-30475415)
chr2 (24-85)||(23767782-23767843)
chr2 (24-85)||(23784236-23784297)
chr2 (24-85)||(23796951-23797012)
chr2 (24-85)||(30384061-30384122)
chr2 (24-84)||(30482958-30483018)
chr2 (24-84)||(30436484-30436544)
chr2 (24-84)||(30468226-30468286)
chr2 (24-66)||(30424233-30424275)
chr2 (24-66)||(30430266-30430308)
chr2 (24-83)||(8380056-8380115)


Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 402
Target Start/End: Complemental strand, 41628395 - 41628001
Alignment:
Q  11 tcgaagaatattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttatgacaaaagttcaaatgaatttttac 110  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628395 tcgaacaacattcggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttatgacaaaagttcaaatgaatttttac 41628296  T
Q  111 attcctctatggaggtaattaagactattctttatatcat---atatagtgtttaactattgaagtctattcattttttatgtctctaatatttgtaatt 207  Q
    ||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41628295 attcctctatggaggtaattaagactaatctttatatcatcatatatagtgtttaactattaaagtctattcattttttatgtctctaatatttgtaatt 41628196  T
Q  208 aatcactaggaggccagttacacgaatgacatgtttatttgcaggtttgtacctactatggtcaataggaggattaatgaaattgggaaagatataaaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628195 aatcactaggaggccagttacacgaatgacatgtttatttgcaggtttgtacctactatggtcaataggaggattaatgaaattgggaaagatataaaat 41628096  T
Q  308 cttcacttaaggatatgatcaacaaaagggtgaaaatattaaaggaaggtggagaaaataagaatgatttattaggtattcttatagagacaaac 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628095 cttcacttaaggatatgatcaacaaaagggtgaaaatattaaaggaaggtggagaaaataagaatgatttattaggtattcttatagagacaaac 41628001  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 30394190 - 30394261
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttatgacaaaagtt 95  Q
    |||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| |||| ||||    
T  30394190 ggaagtagttatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaacttataacaacagtt 30394261  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 30475355 - 30475415
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 84  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||    
T  30475355 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaatcgagcaagctgaactta 30475415  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 23767782 - 23767843
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 85  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  23767782 ggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttat 23767843  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 23784297 - 23784236
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 85  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  23784297 ggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttat 23784236  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 23796951 - 23797012
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 85  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||    
T  23796951 ggaagtagttatgaagaaggaagaaaagtatttcaacttcaaatagagcaaggtgaacttat 23797012  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 30384061 - 30384122
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaacttat 85  Q
    |||||||| ||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  30384061 ggaagtagctatgaagaaggaaaaagaatatttcaacttcaaagagagcaagctgaacttat 30384122  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 30482958 - 30483018
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 84  Q
    |||||||||||||||||||||| || |||||||||||||||||  ||||||||||||||||    
T  30482958 ggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagcaagctgaactta 30483018  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 30436484 - 30436544
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 84  Q
    ||||||||||||||||| |||| ||||||||||||||||||||  || |||||||||||||    
T  30436484 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaactta 30436544  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 30468226 - 30468286
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactta 84  Q
    ||||||||||||||||| |||| ||||||||||||||||||||  || |||||||||||||    
T  30468226 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaaccgaacaagctgaactta 30468286  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 30424233 - 30424275
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaa 66  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  30424233 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaa 30424275  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 30430266 - 30430308
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaa 66  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  30430266 ggaagtagttatgaagagggaaaaagaatatttcaacttcaaa 30430308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 8380115 - 8380056
Alignment:
Q  24 ggaagtagttatgaagaaggaagaagaatatttcaacttcaaattgagcaagctgaactt 83  Q
    ||||||||||| |||||||||| |||||||||| | |||||||  ||||||| |||||||    
T  8380115 ggaagtagttacgaagaaggaaaaagaatatttgatcttcaaagagagcaaggtgaactt 8380056  T

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