View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16493_low_4 (Length: 275)
Name: NF16493_low_4
Description: NF16493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16493_low_4 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 3896966 - 3896723
Alignment:
| Q |
15 |
atgaacaaaggcctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttga |
114 |
Q |
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| T |
3896966 |
atgaacaaagacctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttga |
3896867 |
T |
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| Q |
115 |
taggctttagatgaagcacgtaatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcaccctct |
214 |
Q |
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| T |
3896866 |
taggctttagatgaagcacgtaatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcatcctct |
3896767 |
T |
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| Q |
215 |
ggacttttgatgacatggtaaaatgtctataccataatcatcac |
258 |
Q |
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| T |
3896766 |
ggacttttgatgacatggtaaaatgtctatacaataatcatcac |
3896723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 240
Target Start/End: Original strand, 46285038 - 46285194
Alignment:
| Q |
87 |
actgaatcaattttcttttccttgttgataggctttagatgaagcacgtaatgagct---caaattgggagatgaatactacaaagacagcacggttcgc |
183 |
Q |
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| T |
46285038 |
actgaaacaatattcttttccttctggataggcttttgaggaagcaattgctgaactggacacattgggagaagaatcctacaaagacagcacacttata |
46285137 |
T |
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| Q |
184 |
atgcaacttttgagaaacaacatcaccctctggacttttgatgacatggtaaaatgt |
240 |
Q |
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| T |
46285138 |
atgcaacttttgagagacaacctcaccctttggacttctgatgtccaggtaaaatgt |
46285194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 4620 - 4377
Alignment:
| Q |
15 |
atgaacaaaggcctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
4620 |
atgaacaaaggcctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacttgtactgaatcaattttattttccttgttga |
4521 |
T |
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| Q |
115 |
taggctttagatgaagcacgtaatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcaccctct |
214 |
Q |
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| T |
4520 |
taggctttagatgaagcacgtaatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcaccctct |
4421 |
T |
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| Q |
215 |
ggacttttgatgacatggtaaaatgtctataccataatcatcac |
258 |
Q |
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| T |
4420 |
ggacttttgatgacacggtaaaatgtctatacaataatcatcac |
4377 |
T |
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