View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16493_low_5 (Length: 227)
Name: NF16493_low_5
Description: NF16493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16493_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 30438469 - 30438535
Alignment:
| Q |
18 |
gagcataaattaggtaatacgccatctcggataagagaactttgccacaagttccacaaccgagcat |
84 |
Q |
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| T |
30438469 |
gagcataaattaggtaatacgccatctcggataaaagaactttgccacaagttccacaaccgagcat |
30438535 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 30438506 - 30438569
Alignment:
| Q |
147 |
aactttgccacaagttcaacaacctagtataaatacaatttaggtaaaacctacatcccaaaac |
210 |
Q |
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||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
30438506 |
aactttgccacaagttccacaaccgagcataaatacaatttaggtaaaacctacatcccaaaac |
30438569 |
T |
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