View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16494_high_5 (Length: 322)
Name: NF16494_high_5
Description: NF16494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16494_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 3745099 - 3744806
Alignment:
| Q |
1 |
cacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacatgttcgtgattg |
100 |
Q |
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| T |
3745099 |
cacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcagaattcatacgtgttcgtgattg |
3745000 |
T |
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| Q |
101 |
acatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaagg |
200 |
Q |
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| T |
3744999 |
acatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaagg |
3744900 |
T |
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| Q |
201 |
tggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgct |
294 |
Q |
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| T |
3744899 |
tggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatactgatgctgtttctgct |
3744806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 48303219 - 48303031
Alignment:
| Q |
82 |
tcatacatgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
181 |
Q |
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| T |
48303219 |
tcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaaggaaga |
48303120 |
T |
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| Q |
182 |
gggaagaagagaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgct |
273 |
Q |
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| T |
48303119 |
gagaagaagagaaagaaggtggt---aaatatttgaagatggaaagaagggttggtaagtttatgaggaaatttgtgttaccagagaatgct |
48303031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 10462171 - 10462270
Alignment:
| Q |
91 |
ttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaag |
190 |
Q |
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| T |
10462171 |
ttcgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatgataaagtggttgtgataaccggcgagaggaagagggaagaag |
10462270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 10539931 - 10539854
Alignment:
| Q |
113 |
tgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaagagggaagaag |
190 |
Q |
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| T |
10539931 |
tgaaatctgatgatatcaaggttgaggttgaagatgataatgtggttgtgataaccggcgagaggaagagggaagaag |
10539854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 10543543 - 10543464
Alignment:
| Q |
145 |
gatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaaggtggtgcaaagtatttgagaatgga |
224 |
Q |
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| T |
10543543 |
gatgaaaatgtggttgtgataagtggagaaaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatgga |
10543464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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