View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16494_high_6 (Length: 300)
Name: NF16494_high_6
Description: NF16494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16494_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 34879115 - 34878823
Alignment:
| Q |
1 |
catctgagataatgtctctgccacttgaactagtttgtcaatgtactcatccattgtttgactgcatttacacacacatatggttagaacaacatctcca |
100 |
Q |
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| T |
34879115 |
catctgagataatgtctctgccacttgaactagtttgtcaatgtactcatccattgtttgactgcatttacacacacatattgttagaacaacagctccg |
34879016 |
T |
|
| Q |
101 |
gtttaaaataataaagatacgaaaatgcaaatagcgaaaaacacaatgtttggtaacgttgaatagactaaccaaagatcctcagagaggtttggaattt |
200 |
Q |
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| T |
34879015 |
gtttaaaataataaagatacgaaaatgcaaatagcgaaaaacacaatgtttggtaacgttgaatagactaaccaaagatcctcagagaggtttggaattt |
34878916 |
T |
|
| Q |
201 |
tcctaatgttagacgtcggacgatgccaaatgaagaatgaactttcccagtcaacatcacaggtgttctcctttttctccaacctctctgcta |
293 |
Q |
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| T |
34878915 |
tcctaatgttagacgtcggacgatgccaaatgaagaatgaactttcccagtcaacatcacaggtgttctcctttttctccaacctctttgcta |
34878823 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 41810571 - 41810621
Alignment:
| Q |
105 |
aaaataataaagatacgaaaatgcaaatagcgaaaaacacaatgtttggta |
155 |
Q |
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| T |
41810571 |
aaaagaataaagatatgaaaatgcaaacagagaaacacacaatgtttggta |
41810621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 26492771 - 26492831
Alignment:
| Q |
84 |
ttagaacaacatctccagtttaaaataataaagatacgaaaatgcaaatagcgaaaaacac |
144 |
Q |
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| T |
26492771 |
ttagatcaacaactcaagttcaaaagaataaagatacgaaaatgctaatagagaaacacac |
26492831 |
T |
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