View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16495_high_14 (Length: 259)

Name: NF16495_high_14
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16495_high_14
NF16495_high_14
[»] chr7 (2 HSPs)
chr7 (28-161)||(5968453-5968586)
chr7 (157-244)||(5968327-5968414)
[»] chr3 (3 HSPs)
chr3 (167-240)||(47895822-47895893)
chr3 (189-223)||(49836280-49836314)
chr3 (168-221)||(12059111-12059164)
[»] chr2 (4 HSPs)
chr2 (166-240)||(8398267-8398341)
chr2 (174-226)||(13601359-13601409)
chr2 (167-218)||(31637115-31637165)
chr2 (160-210)||(18906772-18906822)
[»] chr1 (3 HSPs)
chr1 (102-145)||(23646700-23646743)
chr1 (167-220)||(24214128-24214181)
chr1 (174-222)||(49205661-49205709)
[»] chr4 (4 HSPs)
chr4 (173-222)||(14196233-14196282)
chr4 (173-222)||(43389613-43389662)
chr4 (114-150)||(31031444-31031480)
chr4 (174-222)||(53965228-53965276)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 5968586 - 5968453
Alignment:
Q  28 aaaacataatgcatataacttgagaattcaaacttaaacctgtgttataaaggatgtaagctgattattatcaagagaaatatttggttggacataaccc 127  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||  || | || ||||     
T  5968586 aaaacataatgcatataacttgagaattcaaacttaaacctatgttataaaggatgcaagctgattattatcaagagaaatatttcatttggcacaacct 5968487  T
Q  128 caaatcaaaaatatttaggcacacatgcatgatt 161  Q
    |||||||||||||||||| ||||||| |||||||    
T  5968486 caaatcaaaaatatttagacacacatacatgatt 5968453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 5968414 - 5968327
Alignment:
Q  157 tgattaaaatatttcttttttaaattttgtcattcatgtatgtgtgtccaaataaattttatttagggttttgcttatgcaagaattg 244  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||    
T  5968414 tgattaaattatttctcttttaaattttatcattcatgtatgtgtgtccaaataaattttatttagtgttgtgcctatgcaaaaattg 5968327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 47895893 - 47895822
Alignment:
Q  167 atttcttttttaaattttgtcattcatgtatgtgtgtccaaataaattttatttagggttttgcttatgcaaga 240  Q
    |||||| ||||||||||| ||| ||||||  |||||| |||||||||||||||||||||| || ||||||||||    
T  47895893 atttctcttttaaattttatcaatcatgt--gtgtgttcaaataaattttatttagggttgtgtttatgcaaga 47895822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 49836314 - 49836280
Alignment:
Q  189 ttcatgtatgtgtgtccaaataaattttatttagg 223  Q
    |||||||||||||||||| ||||||||||||||||    
T  49836314 ttcatgtatgtgtgtccatataaattttatttagg 49836280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 12059111 - 12059164
Alignment:
Q  168 tttcttttttaaattttgtcattcatgtatgtgtgtccaaataaattttattta 221  Q
    ||||| ||| ||||||| ||||| ||||||||||||| | ||||||||||||||    
T  12059111 tttctctttaaaattttatcatttatgtatgtgtgtcaatataaattttattta 12059164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 8398267 - 8398341
Alignment:
Q  166 tatttcttttttaaattttgtcattcatgtatgtgtgtccaaataaattttatttagggttttgcttatgcaaga 240  Q
    ||||||| ||||||| ||| |||||||||||||||||||||| ||||| | ||||| |||| |  ||||||||||    
T  8398267 tatttctcttttaaactttatcattcatgtatgtgtgtccaagtaaatatcatttaaggttgtatttatgcaaga 8398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 13601359 - 13601409
Alignment:
Q  174 ttttaaattttgtcattcatgtatgtgtgtccaaataaattttatttagggtt 226  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||||||||||||    
T  13601359 ttttaaattttatcagtcatgt--gtgtgtccaaataaattttatttagggtt 13601409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 31637115 - 31637165
Alignment:
Q  167 atttcttttttaaattttgtcattcatgtatgtgtgtccaaataaattttat 218  Q
    |||||||||||||||||| ||||| |||||| |||| |||||||||||||||    
T  31637115 atttcttttttaaattttatcatt-atgtatatgtgcccaaataaattttat 31637165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 18906822 - 18906772
Alignment:
Q  160 ttaaaatatttcttttttaaattttgtcattcatgtatgtgtgtccaaata 210  Q
    ||||| ||||| | |||||||||||||||||||||||| ||||| ||||||    
T  18906822 ttaaattatttatcttttaaattttgtcattcatgtatatgtgttcaaata 18906772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 145
Target Start/End: Original strand, 23646700 - 23646743
Alignment:
Q  102 gagaaatatttggttggacataaccccaaatcaaaaatatttag 145  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||    
T  23646700 gagaaatacttggttggacacaactccaaatcaaaaatatttag 23646743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 24214128 - 24214181
Alignment:
Q  167 atttcttttttaaattttgtcattcatgtatgtgtgtccaaataaattttattt 220  Q
    |||||||||||||||||| ||  |||||| ||| || |||||||||||||||||    
T  24214128 atttcttttttaaattttatcgatcatgtgtgtttgcccaaataaattttattt 24214181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 49205709 - 49205661
Alignment:
Q  174 ttttaaattttgtcattcatgtatgtgtgtccaaataaattttatttag 222  Q
    ||||||||||| |||||||||||| ||||| || |||| ||||||||||    
T  49205709 ttttaaattttatcattcatgtatttgtgttcatataacttttatttag 49205661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 14196282 - 14196233
Alignment:
Q  173 tttttaaattttgtcattcatgtatgtgtgtccaaataaattttatttag 222  Q
    |||||||||||| | ||| |||||||||||| || |||||||||||||||    
T  14196282 tttttaaattttattattgatgtatgtgtgttcatataaattttatttag 14196233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 43389662 - 43389613
Alignment:
Q  173 tttttaaattttgtcattcatgtatgtgtgtccaaataaattttatttag 222  Q
    |||||||||||| | ||| |||||||||||| || |||||||||||||||    
T  43389662 tttttaaattttattattgatgtatgtgtgttcatataaattttatttag 43389613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 31031444 - 31031480
Alignment:
Q  114 gttggacataaccccaaatcaaaaatatttaggcaca 150  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  31031444 gttggacacaaccccaaatcaaaagtatttaggcaca 31031480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 53965228 - 53965276
Alignment:
Q  174 ttttaaattttgtcattcatgtatgtgtgtccaaataaattttatttag 222  Q
    ||||||||||| |||||||||||| ||||| || |||| ||||||||||    
T  53965228 ttttaaattttatcattcatgtatttgtgttcatataacttttatttag 53965276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University