View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16495_high_15 (Length: 252)

Name: NF16495_high_15

Description: NF16495

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16495_high_15

[»] scaffold0005 (2 HSPs)

Target: scaffold0005 (Bit Score: 134; Significance: 7e-70; HSPs: 2)

Name: scaffold0005

Description:

Target: scaffold0005; HSP #1

Raw Score: 134; E-Value: 7e-70

Query Start/End: Original strand, 18 - 170

Target Start/End: Complemental strand, 286581 - 286428

Alignment:

Q	18	gtatgaaggttctaagctgcttaaattcagaaaagatctcaaacttttctggatcatcatatataccttgtaaataagataaatggcgaacactagtcgt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	286581	gtatgaaggttctaagctgcttaaattcagaaaagatctcaaacttttctggatcatcatatataccttgtaaataagataaatggcgaacaatagtcgt	286482	T

Q	118	gatttttcttggattgttatcatctaa-ttgtaacagaattcgcctacaacaaa	170	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	286481	gatttttcttggattgttatcatctaagttgtaacagaattcacctgcaacaaa	286428	T

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Target: scaffold0005; HSP #2

Raw Score: 67; E-Value: 7e-30

Query Start/End: Original strand, 163 - 237

Target Start/End: Original strand, 286289 - 286363

Alignment:

Q	163	acaacaaagaacggataagagaatggaagatgtaggagaagaatgctttgaagtgttgctatctagatcgttctt	237	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	286289	acaacaaagaacggataagagaatggaagatgtaagagaagaatgctttgaagtgttactatctagatcgttctt	286363	T

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