View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_high_17 (Length: 239)
Name: NF16495_high_17
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 81 - 221
Target Start/End: Original strand, 43381750 - 43381886
Alignment:
| Q |
81 |
gcaaaatttcaggtgtttgatcatataatccgttattattaagatgtccgtccaccaaaaaataaagccttagctgacactgtatcaactatgcgtacat |
180 |
Q |
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| T |
43381750 |
gcaaaatttcaggtgtttgatcgtataatccgttattattaagatgtcc----accaaaaaataaagccttagctgacactgtatcaactatacgtacat |
43381845 |
T |
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| Q |
181 |
caaggaacaactaactatttaactctatggaatcctcaatg |
221 |
Q |
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| T |
43381846 |
caaggaacaactaactatttaactctagggaatcctcaatg |
43381886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 25871220 - 25871347
Alignment:
| Q |
1 |
actcaacagttgaattataaacaagatatctcattcaggcaaaccaaatagtcaacaacatgagcacccattttgttcgtgcaaaatttcaggtgtttga |
100 |
Q |
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| T |
25871220 |
actcaacagttgaattataaacaatatatctcattcaggcaaaccaa-tagtcaacaacacgatcacccattttgttcgtgcaaaatttcaggtgtttga |
25871318 |
T |
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| Q |
101 |
tcatataatccgttattattaagatgtcc |
129 |
Q |
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| T |
25871319 |
tcatataatccgttattattaagatgtcc |
25871347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 25871517 - 25871577
Alignment:
| Q |
133 |
caccaaaaaataaagccttagctgacactgtatcaactatgcgtacatcaaggaacaacta |
193 |
Q |
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| T |
25871517 |
caccaaaaaataatgccttagctgacactgtatcaactatgcgtacatcaaggaacaacta |
25871577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43381712 - 43381754
Alignment:
| Q |
1 |
actcaacagttgaattataaacaagatatctcattcaggcaaa |
43 |
Q |
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| T |
43381712 |
actcaacagttgaattataaacaagatgtctcattcaggcaaa |
43381754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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