View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_high_19 (Length: 214)
Name: NF16495_high_19
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 38163897 - 38164082
Alignment:
| Q |
15 |
aaaatcaatttgtttctctcacttttataattgaacgtttccctcgcttttggttttctcatcaaagtttccctttctctcacaaattgatcgaggattt |
114 |
Q |
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| T |
38163897 |
aaaatcaatttgtttctctcacttttataattgaacgtttccctcgcttttggttttctcatcaaagtttccctttctctcacaaattgatcgaggattt |
38163996 |
T |
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| Q |
115 |
cttcacgtggaagttagggttttgtctcttggaagtgataactggggtaaatttcttctcttaattttaacatttttgttgttctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38163997 |
cttcacgtggaagttagggttttgtctcttggaagtgataacttgggtaaatttcttctcttaattttaacatttttgttgttctt |
38164082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 38175810 - 38175708
Alignment:
| Q |
93 |
ctcacaaattgatcgaggatttcttcacgtggaagttagggttttgtctcttggaagtgataactggggtaa----atttcttctcttaattttaacatt |
188 |
Q |
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|||||||||||||||| ||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38175810 |
ctcacaaattgatcgacgatttcttcactttgaagttaaggttttgtctctttgaagtgataactggggtaaatttatttcttctcttaattttaacatt |
38175711 |
T |
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| Q |
189 |
ttt |
191 |
Q |
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||| |
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| T |
38175710 |
ttt |
38175708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 38203034 - 38202932
Alignment:
| Q |
93 |
ctcacaaattgatcgaggatttcttcacgtggaagttagggttttgtctcttggaagtgataactggggtaa----atttcttctcttaattttaacatt |
188 |
Q |
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| T |
38203034 |
ctcacaaattgatcgacgatttcttcactttgaagttaaggttttgtctctttgaagtgataactggggtaaatttatttcttctcttaattttaacatt |
38202935 |
T |
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| Q |
189 |
ttt |
191 |
Q |
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||| |
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| T |
38202934 |
ttt |
38202932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 38175925 - 38175850
Alignment:
| Q |
25 |
tgtttctctcacttttataattgaacgtttccctcgcttttggttttctcatcaaagtttccctttctctcacaaa |
100 |
Q |
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| T |
38175925 |
tgtttctctcacttttataattgaacgtttccctcgcttttggatttctgttcgttatttccctttctctcacaaa |
38175850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 38203149 - 38203074
Alignment:
| Q |
25 |
tgtttctctcacttttataattgaacgtttccctcgcttttggttttctcatcaaagtttccctttctctcacaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |
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| T |
38203149 |
tgtttctctcacttttataattgaacgtttccctcgcttttggatttctgttcgttatttccctttctctcacaaa |
38203074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 11587381 - 11587442
Alignment:
| Q |
143 |
ttggaagtgataactggggtaaa----tttcttctcttaattttaacatttttgttgttctt |
200 |
Q |
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| T |
11587381 |
ttggaagtgataactggggtaaataaatttcttctcttaattttaacatttttgttgttctt |
11587442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 12818769 - 12818693
Alignment:
| Q |
107 |
gaggatttcttcacgtggaagttagggttttgtctcttggaagtgataactggggtaaatttcttctcttaatttta |
183 |
Q |
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|||||||| |||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||| |
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| T |
12818769 |
gaggattttctcacttggaagttagggttttgtcgattgaaactgataactggggtaaatttcttctctgaatttta |
12818693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 10659972 - 10660031
Alignment:
| Q |
136 |
ttgtctcttggaagtgataactggggtaaatttcttctcttaattttaacatttttgttgtt |
197 |
Q |
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||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||||| |
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| T |
10659972 |
ttgtcacttggaagtgataactggggtaaatttcttccctgcattttaac--ttttgttgtt |
10660031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 10874117 - 10874176
Alignment:
| Q |
136 |
ttgtctcttggaagtgataactggggtaaatttcttctcttaattttaacatttttgttgtt |
197 |
Q |
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||||| ||||||||||||||||||||||||||||||| || |||||||| |||||||||| |
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| T |
10874117 |
ttgtcacttggaagtgataactggggtaaatttcttccctgcattttaac--ttttgttgtt |
10874176 |
T |
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