View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_high_5 (Length: 502)
Name: NF16495_high_5
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 48080492 - 48080188
Alignment:
| Q |
20 |
gtcaaacattccaatcaatagttgattattcacaatcacaatcctcacaaatgttgcacccaacgtgtaccttgtattcacaacaaatcaattttaaaaa |
119 |
Q |
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| T |
48080492 |
gtcaaacattccaaccaatagttgattattcacaatcacaatcctcacaaatgttgcactcaacgtgtaccttgtattcacaacaaatcaattttaaaaa |
48080393 |
T |
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| Q |
120 |
taaactaagcaattatcacaaaacatgcaatcaatcatggatcactaatatatttccttgggttgtaatatgttagtcttcacaaaatcctttgtttttc |
219 |
Q |
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| T |
48080392 |
taaactaagcaattatcacaaaacatgcaatcaatcatggatcactaatatatttccttgggttgtaatatgttagtcttcacaaaatcctttgtttttc |
48080293 |
T |
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| Q |
220 |
taagaacgcaaaaagcctgaaaggttaaaagaacattttttcaatatacactacatatcctgaccacactttctttccttttccacactcaacaccattt |
319 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48080292 |
taagaacgcaaaaagcctaaaaggttaaaagaacattttttcaatatacactacatatcctgaccacactttctttccttttccactctcaacaccattt |
48080193 |
T |
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| Q |
320 |
ggtaa |
324 |
Q |
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||||| |
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| T |
48080192 |
ggtaa |
48080188 |
T |
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