View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_high_8 (Length: 343)
Name: NF16495_high_8
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 52067283 - 52067056
Alignment:
| Q |
1 |
gcctgttgagttgcctttaagcattacatatactatatataaagatatgcaacagctttacaacaattggtttatttnnnnnnntgtagcactaacacct |
100 |
Q |
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| T |
52067283 |
gcctgttgagttgcctttaagcattacatatactatatataaagatatgtaacagctttacaacaatgggtttatttaaaaaaatgtagcaatgacactt |
52067184 |
T |
|
| Q |
101 |
ctgatcgaaggtatgtcttgtatctgacaccgacatatgtaactataatcaattaattaattaattttcttaaattattcttggtgtcgacgtgtcagtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| |
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| T |
52067183 |
ttgatcgaaggtatgtcttgtatctgacaccgacatatgtaactataatcaattaattaattcattttcttaaattattattggtatcgacgtgtcagtg |
52067084 |
T |
|
| Q |
201 |
ttgtgtctagtgtctgtcagtgcttcat |
228 |
Q |
| |
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||||||| ||||||||||||||||||| |
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| T |
52067083 |
ttgtgtccggtgtctgtcagtgcttcat |
52067056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 52067034 - 52066959
Alignment:
| Q |
137 |
atgtaactataatcaattaattaattaatt----ttcttaaattattcttggtgtcgacgtgtcagtgttgtgtct |
208 |
Q |
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| T |
52067034 |
atgtaactacaattaattaattaattaatttatattcttaaattattattggtgtcgacgtgtgagtgttgtgtct |
52066959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 52066984 - 52066949
Alignment:
| Q |
300 |
ggtgtcgacgtgtgagtgttgtgtctgatgtctgtg |
335 |
Q |
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| T |
52066984 |
ggtgtcgacgtgtgagtgttgtgtctgatttctgtg |
52066949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 43886629 - 43886568
Alignment:
| Q |
153 |
ttaattaattaattttcttaaattattcttggtgtcgacgtgtcagtgttgtgtctagtgtc |
214 |
Q |
| |
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||||| |||| ||| |||||||||||| |||||||||||||| |||||||||||| ||||| |
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| T |
43886629 |
ttaatcaattcattatcttaaattattactggtgtcgacgtgttagtgttgtgtctggtgtc |
43886568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 16047706 - 16047768
Alignment:
| Q |
166 |
tttcttaaattattcttggtgtcgacgtgtcagtgttgtgtctagtgtctgtcagtgcttcat |
228 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||| |||| |||| |||| ||||||||| |
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| T |
16047706 |
tttcttaaattattattggtgtccacatgtcagtgttctgtcccgtgtgtgtctgtgcttcat |
16047768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 34331422 - 34331370
Alignment:
| Q |
153 |
ttaattaattaattttcttaaattattcttggtgtcgacgtgtcagtgttgtg |
205 |
Q |
| |
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||||||| |||||||||||||||||| |||||| | |||||| ||||||||| |
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|
| T |
34331422 |
ttaattatataattttcttaaattattattggtggcaacgtgttagtgttgtg |
34331370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 13338681 - 13338725
Alignment:
| Q |
163 |
aattttcttaaattattcttggtgtcgacgtgtcagtgttgtgtc |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
13338681 |
aattttcttaaattattactggtgtcgacgtgttagtgttgtgtc |
13338725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 11815853 - 11815808
Alignment:
| Q |
164 |
attttcttaaattattcttggtgtcgacgtgtcagtgttgtgtcta |
209 |
Q |
| |
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||||||| |||||||| |||||||| |||||||||||| ||||||| |
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| T |
11815853 |
attttctcaaattattattggtgtcaacgtgtcagtgtcgtgtcta |
11815808 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 14227246 - 14227193
Alignment:
| Q |
164 |
attttcttaaattattcttggtgtcgacgtgtcagtgttgtgtctagtgtctgt |
217 |
Q |
| |
|
||||||| |||||||| ||||||| |||||||||||| ||||| ||||||||| |
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|
| T |
14227246 |
attttctcaaattattattggtgttgacgtgtcagtgacgtgtccagtgtctgt |
14227193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 17930487 - 17930423
Alignment:
| Q |
164 |
attttcttaaattattcttggtgtcgacgtgtcagtgttgtgtctagtgtctgtcagtgcttcat |
228 |
Q |
| |
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| T |
17930487 |
attttcttaaattagtattggtgtcgacgtgtcaatgtcgtgttcagtgtcggtctgtgcttcat |
17930423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 43328500 - 43328441
Alignment:
| Q |
155 |
aattaattaattttcttaaattattcttggtgtcgacgtgtcagtgttgtgtctagtgtc |
214 |
Q |
| |
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||||| || ||||||| |||||||| | ||||| ||||||||||||||||||||||||| |
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| T |
43328500 |
aattatttcattttctcaaattattataagtgtcaacgtgtcagtgttgtgtctagtgtc |
43328441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 9878058 - 9878104
Alignment:
| Q |
155 |
aattaattaattttcttaaattattcttggtgtcgacgtgtcagtgt |
201 |
Q |
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|||||||| || |||| |||||||| ||||||||||||||||||||| |
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| T |
9878058 |
aattaattcatattctcaaattattattggtgtcgacgtgtcagtgt |
9878104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 6424229 - 6424291
Alignment:
| Q |
155 |
aattaattaattttcttaaattattcttggtgtcgacgtgtcagtgttgtgtctagtgtctgt |
217 |
Q |
| |
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|||||||| || || |||| ||||| ||||| |||| ||| |||||||||||||||||||||| |
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|
| T |
6424229 |
aattaattcatctttttaagttattattggtatcgatgtggcagtgttgtgtctagtgtctgt |
6424291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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