View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_low_1 (Length: 684)
Name: NF16495_low_1
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 68 - 667
Target Start/End: Original strand, 25689473 - 25690074
Alignment:
| Q |
68 |
cttctcaaaataccctttattcggcaaatataatcagaactatattttggtaaatacaatccgaactgttctaaaattgctcatgtctattcaaagcttg |
167 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25689473 |
cttctcaaaataccctttgttcggcaaataaaatcagaactatattttggtaaatacaatccgaactgttctaaaattgctcatgtctattcaaagcttg |
25689572 |
T |
|
| Q |
168 |
taaatatgcagttcggattatatatatttgttaaaacacaagaggatttattgcagcagcatgtggaaaacttgatgctgtcttgcaaaattcctcaaga |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
25689573 |
taaatatgcagttcggattatatatatttgttaaaacacaagaggatttattgcagcagtatgtggaaaacttgatgctgtcttgcaaaattcttcaaga |
25689672 |
T |
|
| Q |
268 |
ggagtaggaagtgatatcccagcagtcaaaacatatcaaaatggatcagcaacaaaaccacaagcttacataccagaatatgtatatggccatgacaata |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
25689673 |
ggagtaggaagtgatatcccagcagtcaaaacatatcaaaatggatcagcaacaaaaccacaagcttacataccagaatatgtatatggcaatggcaata |
25689772 |
T |
|
| Q |
368 |
tcaatggaaatggatttcattagtaaatgttataactactactggtgtttacttgatgctttagaaatttttaggttaattgattaaatatggtgtttca |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25689773 |
tcaatggaaatggatttcattagtaaatgttataactactactggtgtttacttgatgctttagaaatttttaggttaattgattaaatatggtgtttca |
25689872 |
T |
|
| Q |
468 |
ggtctttgttaagagaagttgtttgtacagtaaaaaattaaagttggtaggaataaagttaaggatgatacagacagagatgagtattgatcgcggcctt |
567 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25689873 |
ggtctttgttaagagaagttgtttgtacagtaaaaaattaaagttggtaggaatagagttaaggatgatacagacagagatgagtattgatcgcggcctt |
25689972 |
T |
|
| Q |
568 |
tttaatggggatagttcttttaactag--nnnnnnnnnaaatgtttctgagtttggaactcttcatgtaatggaactcttgatgttttggtgcaatacta |
665 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25689973 |
tttaatggggatagctcttttaactagtttttttttttaaatgtttctgagtttggaactcttcatgtaatggaactcttgatgttttggtgcaatacta |
25690072 |
T |
|
| Q |
666 |
ct |
667 |
Q |
| |
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|| |
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| T |
25690073 |
ct |
25690074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 25689427 - 25689461
Alignment:
| Q |
17 |
acttttcgcaccttatgtgttacttatgcgtccta |
51 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
25689427 |
actttttgcaccttatgtgttacttatgcgtccta |
25689461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 25690471 - 25690409
Alignment:
| Q |
119 |
aaatacaatccgaactgttctaaaattgctcatgtctattcaaagcttgtaaatatgcagttc |
181 |
Q |
| |
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|||||||||||||| | || ||||||| |||||||||||||||||| | | ||||||| |||| |
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| T |
25690471 |
aaatacaatccgaattattttaaaatttctcatgtctattcaaagcctatgaatatgcggttc |
25690409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 363 - 633
Target Start/End: Original strand, 29945781 - 29946058
Alignment:
| Q |
363 |
caatatcaatggaaatggatttcattagtaaatgttataactactactg---gtgtttacttgatgctttagaaatttttaggttaattgattaaatatg |
459 |
Q |
| |
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||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||||| |
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| T |
29945781 |
caatatcaatggaaatggatttcattactaaatgatataactactactactagtgtttacttgatgtgttagaaatttcaaggttaattggttaaatatg |
29945880 |
T |
|
| Q |
460 |
gtgtttcaggtctttgttaagagaagttgtttgtacagt-aaaaaattaaagttggtaggaataaag--ttaaggatgatacagacaga---gatgagta |
553 |
Q |
| |
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|||||| ||| |||| ||||||||||||||||||||||| ||||| | |||||||||||||||| || |||||||||||||||||||| |||||| | |
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| T |
29945881 |
gtgtttgagggctttcttaagagaagttgtttgtacagtcaaaaactgaaagttggtaggaatagagttttaaggatgatacagacagagatgatgagca |
29945980 |
T |
|
| Q |
554 |
ttgatcgcggcctttttaatggggatagttcttttaactagnnnnnnnnnaaatgtttctgagtttggaactcttcatgt |
633 |
Q |
| |
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|||||| ||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||| |
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| T |
29945981 |
ttgatcccggcctttttaatggggctagctcttttaacta--agttttttaagtgtttctgagtttggaactcttcatgt |
29946058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 200 - 381
Target Start/End: Original strand, 29945594 - 29945775
Alignment:
| Q |
200 |
aaaacacaagaggatttattgcagcagcatgtggaaaacttgatgctgtcttgcaaaattcctcaagaggagtaggaagtgatatcccagcagtcaaaac |
299 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||| | || ||||||||||||||||||||||||| |||||||||||| |
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| T |
29945594 |
aaaacacaacagggtttattgcagcagcatgcggaaaacttgatgctgtcttacaacactcttcaagaggagtaggaagtgatatccgagcagtcaaaac |
29945693 |
T |
|
| Q |
300 |
atatcaaaatggatcagcaacaaaaccacaagcttacataccagaatatgtatatggccatgacaatatcaatggaaatgga |
381 |
Q |
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|||||| ||||||||||||||||| ||||| ||||| |||||| ||||||||||| ||| ||||||||||||||||||| |
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| T |
29945694 |
atatcagaatggatcagcaacaaagccacatgcttattggccagaacatgtatatggcaatggcaatatcaatggaaatgga |
29945775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 24626397 - 24626487
Alignment:
| Q |
74 |
aaaataccctttattcggcaaatataatcagaactatattttggtaaatacaatccgaactgttctaaaattgctcatgtctattcaaagc |
164 |
Q |
| |
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|||||||||||| || || ||||||||| |||| ||||||| | ||||| ||||| |||| || |||||||||||||| |||| |||||| |
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| T |
24626397 |
aaaataccctttgttaggtaaatataatatgaacaatattttagcaaatataatccaaactattataaaattgctcatgcctatccaaagc |
24626487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 674
Target Start/End: Complemental strand, 5588922 - 5588776
Alignment:
| Q |
526 |
ttaaggatgatacagacagagatgagtattgatcgcggcctttttaatggggatagttcttttaactagnnnnnnnnnaaatgtttctgagtttggaact |
625 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| || || ||||||||||| || |||| ||||||| | ||||| |||| |||||||| |
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| T |
5588922 |
ttaaggatgatacagacagagatgagcattgatcccgacccttttaatggggctaattctcttaactaagttttttt--agtgtttttgaggttggaact |
5588825 |
T |
|
| Q |
626 |
cttcatgtaatggaactcttgatgttttggtgcaatactactgcctttg |
674 |
Q |
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|||||||||||||||||| ||| ||||| |||||||| ||||| ||||| |
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| T |
5588824 |
cttcatgtaatggaactcctgacgttttagtgcaatagtactgtctttg |
5588776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 5588367 - 5588427
Alignment:
| Q |
130 |
gaactgttctaaaattgctcatgtctattcaaagcttgtaaatatgcagttcggattatat |
190 |
Q |
| |
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|||||||||||||||||||||| | |||||||||| | | ||||||||||| ||||||||| |
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|
| T |
5588367 |
gaactgttctaaaattgctcatatttattcaaagcctatgaatatgcagtttggattatat |
5588427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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