View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16495_low_13 (Length: 267)

Name: NF16495_low_13
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16495_low_13
NF16495_low_13
[»] chr1 (1 HSPs)
chr1 (70-267)||(27854362-27854559)
[»] chr7 (3 HSPs)
chr7 (23-205)||(24806597-24806779)
chr7 (23-208)||(22710105-22710290)
chr7 (126-205)||(26280547-26280625)
[»] chr5 (2 HSPs)
chr5 (23-205)||(15274612-15274794)
chr5 (23-204)||(11892375-11892557)
[»] chr3 (3 HSPs)
chr3 (23-204)||(18150225-18150406)
chr3 (23-204)||(13792133-13792314)
chr3 (23-205)||(12412495-12412677)
[»] chr2 (1 HSPs)
chr2 (23-204)||(24221769-24221950)
[»] chr6 (2 HSPs)
chr6 (23-204)||(1709959-1710141)
chr6 (103-204)||(7647504-7647605)
[»] chr8 (5 HSPs)
chr8 (23-204)||(19476006-19476187)
chr8 (23-204)||(19546931-19547112)
chr8 (23-204)||(19585577-19585758)
chr8 (23-140)||(16247395-16247512)
chr8 (137-202)||(28325615-28325680)
[»] chr4 (1 HSPs)
chr4 (23-204)||(1773397-1773578)
[»] scaffold0531 (1 HSPs)
scaffold0531 (25-204)||(10621-10800)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 70 - 267
Target Start/End: Original strand, 27854362 - 27854559
Alignment:
Q  70 aaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtcaaagttttcgccatatatacccacgaaaattagcctgtagtgactgct 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  27854362 aaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtcaaagtttttgccatatatacccacgaaaattagcctgtagtgactgtt 27854461  T
Q  170 tttatccatcactaaaggtcaagtttcttgtagtgatattatacctaatcttgtggacatgaatacaccatatctcaaatacatcactactgccaatt 267  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27854462 tttacccatcactaaaggtcaagtttcttgtagtgatattatacctaatcttgtggacatgaatacaccatatttcaaatacatcactactgccaatt 27854559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 24806597 - 24806779
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  24806597 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 24806696  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtga 205  Q
    ||||||| |||| ||||||| ||| ||| |||||| ||||||| | ||||  || |||||| |||||||||||||||||||||    
T  24806697 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtga 24806779  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 22710290 - 22710105
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  22710290 cgtaggtaaaggtactgtccataggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 22710191  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtgatat 208  Q
    ||||||| |||| ||||||| ||| ||| |||||| ||||||| | ||||  || |||||| ||||||||||||||||||||||||    
T  22710190 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgatat 22710105  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 26280625 - 26280547
Alignment:
Q  126 ttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtga 205  Q
    ||||| |||||||| |||||| ||| |||||| |||||| || ||||  || |||||||| |||||||||||||||||||    
T  26280625 ttttcaccatatatgcccacggaaactagcctctagtga-tggtttttcccgtcactaaaagtcaagtttcttgtagtga 26280547  T

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Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 15274794 - 15274612
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  15274794 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 15274695  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtga 205  Q
    ||||||| |||| ||||||| ||| ||| |||||| ||||||| | ||||  || |||||| |||||||||||||||||||||    
T  15274694 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtga 15274612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 11892557 - 11892375
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaa---aacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtggg 119  Q
    |||||||||||||| ||||||||| |||   ||||||||     ||||| |||||||||||||| || ||||||| ||||||  |||||||||  || ||    
T  11892557 cgtaggtaaaggtattgtccgtagttaattaaacatgcat----agacagaaatccgttgcaacatg-taagtatggtgcacaaccaatgtggttgttgg 11892463  T
Q  120 tcaaagttttcgccatatat---acccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtg 204  Q
    ||||| || ||  || ||||   |||||||||||||||||| ||||||| | ||||  || | | ||||| |||||||||||||||||    
T  11892462 tcaaaattgtcatcaaatattatacccacgaaaattagcctttagtgacggttttttccctttattaaagatcaagtttcttgtagtg 11892375  T

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Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 18150406 - 18150225
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  18150406 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 18150307  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtg 204  Q
    ||||||| |||| ||||||| ||| ||| |||||| ||||||| | ||||  || |||||| ||||||||||||||||||||    
T  18150306 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 18150225  T

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Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 13792314 - 13792133
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  13792314 cgtaggtaaaggtactgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtggatga 13792215  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtg 204  Q
    ||||||| |||| ||||||| ||| ||| |||||| ||||||| | ||||  || |||||  ||||||||||||||||||||    
T  13792214 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcacttgaggtcaagtttcttgtagtg 13792133  T

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Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 12412677 - 12412495
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    ||||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  12412677 cgtaggtaaaggtactgtaagtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggctgtgggtga 12412578  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtga 205  Q
    ||||||| |||| ||||||| ||| ||| |||||| ||||||| | ||||  || |||||| |||||||||||||||||||||    
T  12412577 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtga 12412495  T

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Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 24221950 - 24221769
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  24221950 cgtaggtaaaggtactggccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 24221851  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtg 204  Q
    ||||||| |||| ||||||| ||| ||| |||||| ||||||| | ||||  || |||||| ||||||||||||||||||||    
T  24221850 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 24221769  T

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Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 1709959 - 1710141
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaa-atccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtc 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||     
T  1709959 cgtagataaaggtactgtccgtaggtaaaacatgcacttacagaaaaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtg 1710058  T
Q  122 aaagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtg 204  Q
    |||||||| |||||||||||| ||| ||| |||||| ||||||| | ||||  || |||||| ||||||||||||||||||||    
T  1710059 aaagttttggccatatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 1710141  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 7647605 - 7647504
Alignment:
Q  103 gccaatgtggccgtgggtcaaagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtag 202  Q
    |||||||||||||| |||||| ||| |||||| ||||| |||||||||||||| ||||||||  | ||||  |||||| || | ||||||||||| ||||    
T  7647605 gccaatgtggccgtcggtcaaggttctcgccacatatatccacgaaaattagcatgtagtgatggtttttgcccatcagtacatgtcaagtttctcgtag 7647506  T
Q  203 tg 204  Q
    ||    
T  7647505 tg 7647504  T

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Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 19476187 - 19476006
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |    
T  19476187 cgtaggtaaaggtattgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtgactgtgggtga 19476088  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtg 204  Q
    ||||||| || | ||||||| ||| ||| |||||| ||||||| | ||||  || |||||| ||||||||||||||||||||    
T  19476087 aagttttggcaacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 19476006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 19547112 - 19546931
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |    
T  19547112 cgtaggtaaaggtattgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtgactgtgggtga 19547013  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtg 204  Q
    ||||||| || | ||||||| ||| ||| |||||| ||||||| | ||||  || |||||| ||||||||||||||||||||    
T  19547012 aagttttggcaacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 19546931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 19585577 - 19585758
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |    
T  19585577 cgtaggtaaaggtattgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtgactgtgggtga 19585676  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtg 204  Q
    ||||||| || | ||||||| ||| ||| |||||| ||||||| | ||||  || |||||| ||||||||||||||||||||    
T  19585677 aagttttggcaacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 19585758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 16247512 - 16247395
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  16247512 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 16247413  T
Q  123 aagttttcgccatatata 140  Q
    ||||||| |||| |||||    
T  16247412 aagttttggccacatata 16247395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 28325680 - 28325615
Alignment:
Q  137 tatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtag 202  Q
    ||||||||||||||||||||||| ||||| ||||||  ||||||||| | |||||||| |||||||    
T  28325680 tatacccacgaaaattagcctgttgtgacggcttttgcccatcactacaagtcaagttccttgtag 28325615  T

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Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 1773578 - 1773397
Alignment:
Q  23 cgtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtca 122  Q
    ||||| |||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1773578 cgtagataaaggtactgttcgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtga 1773479  T
Q  123 aagttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcactaaaggtcaagtttcttgtagtg 204  Q
    ||||||| |||| ||||||| | | ||| |||||| ||||||  | ||||  || |||||| ||||||||||||||||||||    
T  1773478 aagttttggccacatatacctatggaaaatagcctttagtgatggtttttgcccgtcactagaggtcaagtttcttgtagtg 1773397  T

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Target: scaffold0531 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 204
Target Start/End: Complemental strand, 10800 - 10621
Alignment:
Q  25 taggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtcaaa 124  Q
    |||||||||||||||||| || |||  |||||||| |  |||||||  || ||||||| |  ||  ||||| |||||||||| ||||||||   |||||     
T  10800 taggtaaaggtactgtccatatgtattacatgcacatgtagacaaatttctgttgcaattcacttggtataatgcacggccagtgtggccgccagtcaat 10701  T
Q  125 gttttcgccatatatacccacgaaaattagcctgtagtgactgcttttatccatcac--taaaggtcaagtttcttgtagtg 204  Q
    ||| ||  |||||||  ||||| ||||||||||||||||| || ||||  |||||||  || | ||||||||||||||||||    
T  10700 gttctcaacatatat--ccacggaaattagcctgtagtgattgtttttgcccatcactatacaagtcaagtttcttgtagtg 10621  T

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