View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_low_16 (Length: 240)
Name: NF16495_low_16
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2863447 - 2863216
Alignment:
| Q |
1 |
gttggaaaacacaactagtaaattaataatcatctcaccttctcaagcaagttaagcatcaacgattcattcatattcatatcttaaattgaaacttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2863447 |
gttggaaaacacaactagtaaattaataatcatctcaccttctcaagcaagttaggtatcaacgattcattcatattcatatcttaaattaaaacttcat |
2863348 |
T |
|
| Q |
101 |
atttcaatttaaaccctccttttcatcaaagaaattttttataattcattattttgttcataaaagcttagtgctattcaatagagaaccacagtcctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
2863347 |
atttcaatttaaaccctccttttcatcaaagaaaaattttataattcattattttgttcataaaagtttagtgctattcaatagagaaccacagtcttga |
2863248 |
T |
|
| Q |
201 |
ttgagggaggcattcttgatcaagattatgcta |
233 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
2863247 |
ttga-ggaggcattcttgatcaagattatgcta |
2863216 |
T |
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