View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_low_2 (Length: 545)
Name: NF16495_low_2
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 7 - 530
Target Start/End: Complemental strand, 2863235 - 2862713
Alignment:
| Q |
7 |
tcttgatcaagattatgctaaacactcactcattgagtatgcttttgtgggctataatgatttgctacaatctgaatgaaatttccttaatatgtgcctg |
106 |
Q |
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| T |
2863235 |
tcttgatcaagattatgctaaacactcactcattcagtatgcttttgtgggctataatgatttgctacaatctgaatgaaatttccttaatatgtgcctg |
2863136 |
T |
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| Q |
107 |
cctatgaatcataacagattccttctactacatccaaacacatgatttgagtccgcagtataggaggggagggtcctacaaaaccatgttccccattgca |
206 |
Q |
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| T |
2863135 |
cctatgaatcataacagattccttctactacatccaaacacatgatttgagtccgcagtataggaggggagggtcctacaaaaccatgttccccattgca |
2863036 |
T |
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| Q |
207 |
ccagcacatcttggcaaaagtctcatacataaaaggatgaacttttatctataaataaatatacacatatgttgtacaccctaaattgaacattacaaca |
306 |
Q |
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| T |
2863035 |
ccagcacatcttggcaaaagtctcatacataaaaggatgaacttttatctataaataaatatacacatatgttttacaccctaaattgaacattacaaca |
2862936 |
T |
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| Q |
307 |
aaacaaatatagccaagattatttgacaggaggaaggtggaaaagatatatatgtacttatacaaatttttcttcttccaatgatcatagcttttgttga |
406 |
Q |
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| T |
2862935 |
atacaaatatagccaagattatttgacaggaggaaggtggaaaagatatatatgtacttatacaaatttttcttcttccaatgatcacagcttttgtt-a |
2862837 |
T |
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| Q |
407 |
tcattttcaagactgtctccaattgacacggatctagattctctgcagtcaagaattctccgcatttaatcaacatcttggtttcgaactcaccaagtta |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2862836 |
tcattttcaagactgtctccaattgacacggatctagattctctgcagtcaagaattctccgcatttaatcaacatcttggtttcgaactcaccaagtta |
2862737 |
T |
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| Q |
507 |
aatttaaaaatatttatgaaactt |
530 |
Q |
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| T |
2862736 |
aatttaaaaatatttatgaaactt |
2862713 |
T |
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