View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_low_4 (Length: 506)
Name: NF16495_low_4
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 4 - 506
Target Start/End: Original strand, 21644659 - 21645161
Alignment:
| Q |
4 |
ttggaataaaatgaggctatctatcaacatcataacccaaaacagggtaaattcactaacaaggcttctcaaatcactcaccaatgcctactatctagga |
103 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644659 |
ttggaacaaaatgaggctatctatcaacatcataacccaaaacagggtaaattcactaacaaggcttctcaaatcactcaccaatgcctactatctagga |
21644758 |
T |
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| Q |
104 |
gatgaaattccaatcactttcaacatggatagtagagttgatgaagcaaccataaaactagtaggttcatttgaatggccacatggatcaaaaacactaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644759 |
gatgaaattccaatcactttcaacatggatagtagagttgatgaagcaaccataaaactagtaggttcatttgaatggccacatggatcaaaaacactaa |
21644858 |
T |
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| Q |
204 |
gaagaagaatcatccaaggtggactcataagagcagtgagtgaaagttggtatccatcttcagatgacgactttggattactacttgaagatgacattga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
21644859 |
gaagaagaatcatccaaggtggactcataagagcagtgagtgaaagttggtatccatcttcagatgacaactttggattactacttgaagatgatattga |
21644958 |
T |
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| Q |
304 |
agtctcaccttattactacctatggatcaaatatgcactcatgaattaccattatgaccctcaagtctctctcccagaactctcttccatctccctatac |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644959 |
agtctcaccttattactacctatggatcaaatatgcactcatgaattaccattatgaccctcaagtctctctcccagaactctcttccatctccctatac |
21645058 |
T |
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| Q |
404 |
acaccaagaattgttgaagttgtcaaagaaagaccgaaatggaatgcgacagaattcttcaaacaaatccatccaaacacaccttaccttcatcaattac |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21645059 |
acaccaagaattgttgaagttgtcaaagaaagaccgaaatggaatgcgacagaattcttcaaacaaatccatccaaacacaccttaccttcatcaattac |
21645158 |
T |
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| Q |
504 |
ctt |
506 |
Q |
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| T |
21645159 |
ctt |
21645161 |
T |
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