View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_low_6 (Length: 482)
Name: NF16495_low_6
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Complemental strand, 54337091 - 54336629
Alignment:
| Q |
19 |
ctgttttgtacatacaggaagttctggcacaggtccttgaggaagctggttatacaaaggattctttcttagtcttgtctgacttcatgaaggtactgaa |
118 |
Q |
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| T |
54337091 |
ctgttttgtacatacaggaagttctggcacaggtccttgaggaagctggttatacaaaggattctttcttagtcttgtctgacttcatgaaggtactgaa |
54336992 |
T |
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| Q |
119 |
acaaataataatatctagcatgacttcttgcactggaatactcaagtttggttaaacatttttataggcaagtggtagatcagggattatgcaccaagtt |
218 |
Q |
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| T |
54336991 |
acaaataataatatctagcatgacttcttgcactggaatactcaagtttggttaaacatttttataggcaagtggtagatcagggattatgcaccaagtt |
54336892 |
T |
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| Q |
219 |
ctttttggtttttctcattcatattattatgatcttaactatttacttcaaatacatggaaactctctcccagaatagttacctatatatgattgcacac |
318 |
Q |
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| T |
54336891 |
ctttttggtttttctcattcatattattatgatcttaactatttacttcaaatacatggaaactctctcccagaata-ttacctatatatgattgcacac |
54336793 |
T |
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| Q |
319 |
atgatagcttggagtgacgaggttgctgactgccatcgagtatggaaattgttcagcgagactacactgacctggccnnnnnnnctcaaatcaaggcctg |
418 |
Q |
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| T |
54336792 |
atgatagcttggagtgacgaggttgctgactgccatcgagtatggaaattgttcagcgagactacactgacctggcctttttttctcaaatcaaggcctg |
54336693 |
T |
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| Q |
419 |
agattgaccgggacctatctgatataggattatttccattgcttgatcttgagaagagtattat |
482 |
Q |
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| T |
54336692 |
agattgaccgggacctatctgatataggattatttccattgcttgatcttgagaagagtattat |
54336629 |
T |
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