View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_low_7 (Length: 388)
Name: NF16495_low_7
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 48684617 - 48684254
Alignment:
| Q |
1 |
caagataccaaaacatcaataattgttaaataccataagtaccctctgtctttgcttatctaatttggattctcttcattattggagatattatctcttt |
100 |
Q |
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| T |
48684617 |
caagataccaaaacatcaataattgttaaataccataagtaccctctgtctttgcttatctaatttggattctcttcattattggagatattatctcttt |
48684518 |
T |
|
| Q |
101 |
tagttctagagaagatccaaacttttggttcagtcaatttaaattaataccttgttttacatgtgnnnnnnnaaaggtgttgccacccttaagtaatcag |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48684517 |
tagtcctagagaagatccaaacttttggttcagtcaatttaaattaataccttgttttacatgtgtttttttaaaggtgttgccacccttaagtaatcag |
48684418 |
T |
|
| Q |
201 |
gactaatctataatgacaatgatgtgtatcatttgaattagtgaagacttttttcgaaataaaaatagtctttccaattatgagttttgctgatctcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48684417 |
gactaatctataatgacaatgatgtgtatcatttgaattagtgaagacttttttcgaaataaaaatagtctttccaattatgagttttgctgatctcttt |
48684318 |
T |
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| Q |
301 |
ttaataatatttaggggtgcaagaattgattagcactttctttaataccaacttagttgaaatc |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48684317 |
ttaataatatttaggggtgcaagaattgattagcactttctttaataccaacttagttgaaatc |
48684254 |
T |
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