View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16495_low_9 (Length: 323)
Name: NF16495_low_9
Description: NF16495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16495_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 24 - 308
Target Start/End: Complemental strand, 3700222 - 3699938
Alignment:
| Q |
24 |
catattatatgtgctcttcaaaaatctacaaattcttttgttcactctttatatttcatgtaaataattacctcatgtaaatcgaaagtttatactattc |
123 |
Q |
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| T |
3700222 |
catattatatgtgctcttaaaaaatctacaaattcttttgttcactctttatatttcatgtaaataattacctcatgtaaatcgaaagtttatactattc |
3700123 |
T |
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| Q |
124 |
ttgtgatttattgtatccttttctttcgaattatagattattagaatttagtttaaagctcaacatattcgttttccttttcctttttatgtgctattcc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
3700122 |
ttgtgatttattgtatccttttctttcgaattatagattattagaatttagtttaaagctcaacatattccttttccttttcctttttatgtgcttttcc |
3700023 |
T |
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| Q |
224 |
atgcccttgatatcaacgccaagttttgattttgtatgtaaccaatgaaaaggcaactcataatcaagaatcttagtagccattt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700022 |
atgcccttgatatcaacgccaagttttgattttgtatgtaaccaatgaaaaggcaactcataatcaagaatcttagtagccattt |
3699938 |
T |
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