View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16496_high_1 (Length: 483)
Name: NF16496_high_1
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16496_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Complemental strand, 8116868 - 8116392
Alignment:
| Q |
8 |
tagtagttaaaagcatgttcagttatccttgggattgttctatcagcatacagttatatactttgactgcaagcagcctccaatttgcttatgactcttc |
107 |
Q |
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| T |
8116868 |
tagtagttaaaagcatgttcagttatccttgggattgttctatcagcatacagttatatactttgactgcaagcagcctccaatttgcttatgactcttc |
8116769 |
T |
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| Q |
108 |
aaaatacatgaattatagtaactgtcattgaagggtctaattattagagaaaaatcaatagtagaatagaagtgcatttgtttcaattatctaattggaa |
207 |
Q |
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| T |
8116768 |
aaaatacatgaattatagtaactatcattgaagggtctaattattagagaaaaatcaatagtagaatagaagtgcatttgtttcaattatctaattggaa |
8116669 |
T |
|
| Q |
208 |
gtgaattacaagaataactttatatagagccaactcagtaaaattgaatggcccttgtgcagaattgggaacatgtaacagtaaaaacagaaaatgataa |
307 |
Q |
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| T |
8116668 |
gtgaattacaagaataactttatatagagccaactcagtaaaattgaatggcccttgtacagaattgggaacatgtaacagtaaaaacagaaaatgataa |
8116569 |
T |
|
| Q |
308 |
ctaacgaattaatagatcaatattagtttgtcaaagactacacctattaattgagtgtagcctt------------tagtcaaatttcacattgcttttt |
395 |
Q |
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| T |
8116568 |
ctaacgaattaatagatcaatattagtttgtcaaagactacacctattaattgagtgtagcctttgtcaagtgatctagtcaaatttcacattgcttttt |
8116469 |
T |
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| Q |
396 |
atttaatatttaannnnnnnnnnnngaacaaattaatatttaattttatagacccacctacatgctataacattctt |
472 |
Q |
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| T |
8116468 |
atttaatatttaatattttttttttgaacaaattaatatttaattttatagacccacctacatgctataacattctt |
8116392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 8106428 - 8106373
Alignment:
| Q |
266 |
gcagaattgggaacatgtaacagtaaaaacagaaaatgataactaacgaattaata |
321 |
Q |
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| T |
8106428 |
gcagaattgggaacaagtaacagtaaaaacagaaaatgattgctaactaattaata |
8106373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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