View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16496_high_11 (Length: 240)
Name: NF16496_high_11
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16496_high_11 |
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| [»] scaffold0578 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 4955727 - 4955516
Alignment:
| Q |
20 |
tgatcatttttcccccggatggtcccccctttagatttgctccctgaatcgagcattagattttacagtattttctatgtccaattgctatacaaagaag |
119 |
Q |
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| T |
4955727 |
tgatcatttttcccccggatggtcccccttttagatttgctccctgaatcgagcattagattttacagtattttctatgtccaattgctatacaaagaag |
4955628 |
T |
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| Q |
120 |
gctaatttaattttagctaatggtggatatttttctatgt-ttttattttggtgcattattccgtacctgtacattacttttgcttcttacaggaagtag |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4955627 |
gctaattgaattttagctaatggtggatatttttctatgttttttattttggtgcattattccgtacctgtacattacttttgcttcttacaggaagtag |
4955528 |
T |
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| Q |
219 |
ggagaaaatacc |
230 |
Q |
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|||||||||||| |
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| T |
4955527 |
ggagaaaatacc |
4955516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0578 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 1719 - 1507
Alignment:
| Q |
20 |
tgatcatttttcccccggatggtcccccctttagatttgctccctgaatcgagcattagattttacagtattttctatgtccaattgctatacaaagaag |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1719 |
tgatcatttttcccccggatggtcccccttttagatttgctccctgaatcgagcattagattttacagtattttctatgtccaattgctatacaaagaag |
1620 |
T |
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| Q |
120 |
gctaatttaattttagctaatggtggatatttttctat--gtttttattttggtgcattattccgtacctgtacattacttttgcttcttacaggaagta |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1619 |
gctaattgaattttagctaatggtggatatttttctattgttttttattttggtgcattattccgtacctgtacattacttttgcttcttacaggaagta |
1520 |
T |
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| Q |
218 |
gggagaaaatacc |
230 |
Q |
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||||||||||||| |
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| T |
1519 |
gggagaaaatacc |
1507 |
T |
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