View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16496_high_12 (Length: 234)
Name: NF16496_high_12
Description: NF16496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16496_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 30810235 - 30810034
Alignment:
| Q |
18 |
caaacatatggttagctgacacattgattacattagcagataattaaatgaaaatacgaagggaagaaaaaggtgcatagtggttatctcatatataact |
117 |
Q |
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| T |
30810235 |
caaacatatgtttagctgacacattgattacattagcagataattaaatgaaaatacgaagggaagaaaaaggtgcatagtggttatctcatatataact |
30810136 |
T |
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| Q |
118 |
tgattattctatatcttttaaaagagaaatgatggtaaataactccaaacttcttgtcatagtacaccaaaaataaaacatcttgtcaaataggatattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30810135 |
tgattattctatatcttttaaaagagaaatgatggtaaataactccaaacttcttgtcatagtacaccaaaaataaaacatcttgtcaaataggatattc |
30810036 |
T |
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| Q |
218 |
tt |
219 |
Q |
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|| |
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| T |
30810035 |
tt |
30810034 |
T |
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